Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g3892 ATGTGGCCCGGCGCGTCGAGATCGCTCAACTACGGTGGCCACGGGGAGATGGCGGGAATGGTCGGCCTCCGCGACGTCTTCGTCGTcgctcaccaccaccaccatcccgCCGCTTCGTCTTTCCACCACCAGAACGACGTCGTAATGCCGGATCTGCACGGCGTCGGGGTCGGCGTCATCCCTCTCCTCACGGCGGCGCCGTGCGACAACAGCGGCATCAATCTCGCCGGTAATCGGAGCcgcggcggcggcggaggaaTTCAGCTTTGGCCGCCGCAGGATCATCATTACAACATGAAGAAACAAGCCGTTCCGGAAATCTCCGTCGCGCACGCCGCCTCCGGCCACGGCGGAGGAGGCGGAAACGCGAGCTCCGGCGGAGGCGCGACGATGACGTGTCAGGACTGCGGGAACCAGGCGAAGAAAGACTGTACTCACAGGAGCGGGGCGACGTCCGGTTCGAAGAAACCGAGACTCATCGGTTCGCAAACTACAACGACGTCTCACACTTCAACTTCCAATACCACTCCTCCTAGAAGCTTCGACACTAGCTCTAGCCATCAAGATGCGAGTTTCAAAGAGACGTTGCCGGGGCAAGTGCGGGCGCCGGCGGTGTTCAAGTGTGTACGAGTGACGGCGGTGGATGAGGGCGACGGTGGCGACTCTCAAATTCTTGCCATAGTTGGCCCTAGTGGCACTGGGAAATCCACCCTCCTCCGAGTCATCGCGGGCCGGGTTGAGGACCCGGGATTCGATCCGGGAACCGTCTCAATCAATGATCATCCAATGACTAGTCCATCTCAGTTGAGGAAGATCTGTGGATTTGTTGCACAAGAGGATAACTTGCTCCCTCTCCTCACTGTGGAAGAGACCTTAATGTTCAGTGCCAAGTTTAGGCTCAAAGGAATGGCAGAAAGGGATAGGCATGTGAGAGTTCAGAGCTTGATGCAAGAGCTTGAGAATAGAGGAATTTCTGGTGGAGAGAGGAAGAGGGTATCTATAGGAGTTGATATGATTCACAATCCTCCAATTTTGATGCTTGATGAGCCCACTTCTGGATTGGATAGTACTTCTGCTCTACAAGTGATACAGCTTCTTTCCTTGATGGCCAAGTCAAAGCAAAGGATAGTGATCCTCTCAATACACCAACCTAGTTACAGAATCTTGCAGTACATTTCAAGGTTTTGGAAAGTGATTTACAGAACAAAGCAGCTTTTCTTGGCCAGAACACTGCAAGCTCTAGTGGGTGGTTTTGGTCTTGGGAGTGTATACATAAAAGTCAGAAAATTAGATGAAGGAGGTGTTGCAGAAAGACTAGGCCTTTTTGCATTTAGCCTTAGCTTTCTCCTTTCTTCCACAGTGGAAGCACTTCCAATATACCTTCAAGAGAGGTGTGTCCTAATGAAAGAAGCCTCAAGAGGAGCCTATAAGATTTCCTCTTACATGCTAGCCAACACACTTGTCTTCCTACCCTTCCTCTTTGTGGTATCCCTACTTTTTGCAGTTCCTGTGTATTGGATTGTAGGACTCAACCCTACACTTTCTGCTTTTGCCTTTTTTACCCTTGTGGTTTGGCTCATAGTGCTCATGGCAAGTTCTCTAGTCCTATTCTTAAGTGCAGTGTCCTCTGACTTCATCTCAGGGAATTCTCTGATATGCACAGTTTTGGGGGCTTTCTTCCTGTTCTCTGGCTATTTCATCCCAAAAGAGAGCATCCCAAAGTATTGGATGTTCATGTACTATGTGTCACTTTATAGGTACCCTTTGGACTCTCTTCTCACAAATGAGTATTGGAATGTGAGGGATAAGTGCTTTTCCAAAGGAGCAGAAGCTGATTATTGCTTGCTTACTGGGTTTGATGTGCTTAAGAGTAGAGGACTTGAGAAGGACACAAGGTGGGTGAATGTGGCCATCATGATTGGATTCTTTGTGTTGTATCGTGTGCTTTGTTGGGTTATTCTTGCTAGAAAGGCCTCAAAGGCAACAATATAG 1992 0.4854 MWPGASRSLNYGGHGEMAGMVGLRDVFVVAHHHHHPAASSFHHQNDVVMPDLHGVGVGVIPLLTAAPCDNSGINLAGNRSRGGGGGIQLWPPQDHHYNMKKQAVPEISVAHAASGHGGGGGNASSGGGATMTCQDCGNQAKKDCTHRSGATSGSKKPRLIGSQTTTTSHTSTSNTTPPRSFDTSSSHQDASFKETLPGQVRAPAVFKCVRVTAVDEGDGGDSQILAIVGPSGTGKSTLLRVIAGRVEDPGFDPGTVSINDHPMTSPSQLRKICGFVAQEDNLLPLLTVEETLMFSAKFRLKGMAERDRHVRVQSLMQELENRGISGGERKRVSIGVDMIHNPPILMLDEPTSGLDSTSALQVIQLLSLMAKSKQRIVILSIHQPSYRILQYISRFWKVIYRTKQLFLARTLQALVGGFGLGSVYIKVRKLDEGGVAERLGLFAFSLSFLLSSTVEALPIYLQERCVLMKEASRGAYKISSYMLANTLVFLPFLFVVSLLFAVPVYWIVGLNPTLSAFAFFTLVVWLIVLMASSLVLFLSAVSSDFISGNSLICTVLGAFFLFSGYFIPKESIPKYWMFMYYVSLYRYPLDSLLTNEYWNVRDKCFSKGAEADYCLLTGFDVLKSRGLEKDTRWVNVAIMIGFFVLYRVLCWVILARKASKATI 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g3892 663 Pfam ABC transporter 222 352 IPR003439 GO:0005524
Sto5g3892 663 SMART AAA_5 221 405 IPR003593 -
Sto5g3892 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 386 IPR027417 -
Sto5g3892 663 MobiDBLite consensus disorder prediction 138 196 - -
Sto5g3892 663 Pfam ABC-2 type transporter 388 597 IPR013525 GO:0016020|GO:0140359
Sto5g3892 663 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 185 435 IPR003439 GO:0005524
Sto5g3892 663 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 163 395 - -
Sto5g3892 663 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 393 656 - -
Sto5g3892 663 PANTHER ABC TRANSPORTER G FAMILY MEMBER 23 163 395 - -
Sto5g3892 663 PANTHER ABC TRANSPORTER G FAMILY MEMBER 23 393 656 - -
Sto5g3892 663 Pfam Domain of unknown function (DUF702) 152 218 - -
Sto5g3892 663 MobiDBLite consensus disorder prediction 138 193 - -
Sto5g3892 663 Gene3D - 218 410 IPR027417 -
Sto5g3892 663 ProSitePatterns ABC transporters family signature. 324 338 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g3892 Sto-Chr5 47381452 47397487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g3892 2 218 C2H2 Transcription Factor Family AT5G12330 38.989 4.15e-25 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Sto5g3892 ABC2_membrane 9.4e-41 CL0181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g3892 K05681 - gmx:100783883 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g3892 5 47381452 47397487 Sto5g3892 5 47381452 47397487 ECH