Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g3860 ATGGCCGTTCAAGTAATCGGATTTGGTGTTGAAGTTGGTGCAAATTCACTCAACTATGGTCGAGGTGGTGGAAGGGATCGCTTTAGAAGGGATTACCCTTCAAGGTTTGAAGATAAGAGCAACAGTGGGCGTAGTAACAACAACAATCCTCCTTCCAGGCACATTTGGGTTGGGAATCTACCGCACACCATTGTAGAGAATGACCTTGCTCATCATTTTCTACAGTTTGGACCACTTGAGAGTGTTGCATTCCAGCCTGGTCGCAGCTATGCTTTCATTAATTTCAAAAGGGATGAAGATGCTATTGATGCCCTGAACGCACTCCAAGGTTTTCCACTTGCAGGCAACCCGCTTAGGATTGAGTTTGCTAAGGCGCAAAATCTAGGGGCACCAAATCTCAGCTGTGCTCttggtaattaa 420 0.4524 MAVQVIGFGVEVGANSLNYGRGGGRDRFRRDYPSRFEDKSNSGRSNNNNPPSRHIWVGNLPHTIVENDLAHHFLQFGPLESVAFQPGRSYAFINFKRDEDAIDALNALQGFPLAGNPLRIEFAKAQNLGAPNLSCALGN 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g3860 139 MobiDBLite consensus disorder prediction 39 53 - -
Sto5g3860 139 MobiDBLite consensus disorder prediction 23 53 - -
Sto5g3860 139 PANTHER RNA RECOGNITION MOTIF-CONTAINING 34 125 - -
Sto5g3860 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 118 IPR000504 GO:0003723
Sto5g3860 139 PANTHER RNA-BINDING PROTEIN SPENITO 34 125 - -
Sto5g3860 139 MobiDBLite consensus disorder prediction 23 38 - -
Sto5g3860 139 Gene3D - 37 134 IPR012677 -
Sto5g3860 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 125 IPR000504 GO:0003723
Sto5g3860 139 CDD RRM3_Spen 55 124 - -
Sto5g3860 139 SUPERFAMILY RNA-binding domain, RBD 40 128 IPR035979 GO:0003676
Sto5g3860 139 SMART rrm1_1 54 121 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g3860 9 139 Eukaryotic Initiation Factors Gene Family AT2G36660 25.000 5.56e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g3860 - - gmx:100811668 177.563