Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g3854 ATGTACTCAGAGTGTCGTCGTAGTGGCCTAGACGGTCCTGTCCCCGTACAAACCCGTGAAGGCCACCCCAAGATCAACTGGTGCTTTTGGAATGGGCTGATCGAAGCCGAATTGCCGCATCACGCGGTCCGGATGGTGCCATTCAAGGATGTGAAAGCAGATAAGTGGCAACTGTGCACGCCAAATATCTGGGTTTTGATTGTAGTGCTGCGGTATTTCCAAGGGGTGGGGGTACAACGTATTCATCCTCATGAGGTTCATGGTAGGGTAGGGGGTTTGGAGCCAACCATGGGAAGCGATCCCATGCCCACATGTGTACCAAGGTCTGGCAACCTGCGATTTCCTTCTGTTTTTTGTTTGTCGCATTGCACAGCTCACGATACAAGTGAGCCAGTATTGCAGAACCCCAACTCCACACAAGGCTTAGCCTTTGCTCATCAAGTTGTTCTGGCAGTGGGATTATGCCCAAATAAAACCCACAAACTTCTCCCCAATTTAGGCCTGTATGCCCACAGACCGAGAATCACGGACATGATGGTTATTGAGCATTTCAATTCGTTGCGTGAGGCTTACATTGGTTTCTTTATATTGCCTAAGGAATTTAGTATTGAGAAGCTTCAGAGTGTCACCAATTTGTTGTCTGGACTGTCTCAAGCTCATTCCTTGACACTTGAAAGCCAGTCCATTGagTGGAAGGATCAAATTAAACTTGACAGTGGTTCCATCACTTATAATGACAAGCCTTATACCAAATCACTGAAGCAGAGGATTGGGTATGTGACACAAGATGATGTTGTGTTCCCTCATCTTACTGTAAAGGAAACTCTCACTTATGTAGCTTTGCTCTGTCTTTCCATGAATCTATCAAGAACACAGAAGAAAGAGAGGGCTGTGAATGTTTTGAGTGAGGCTGGATACTACTGCTCAGTTTGTGAGTGTGTGGTAAAGGATTCTGCTAACTACTTGGATCATATTAATGGAAAGAAGCATCAACGAGCACTGGGAATGTCTATGCGAGTGGAACGTGCTTCTATTGGACAGaaggaaaaagaagttgaAGAAGCACCTGAAACAGATCCTGATGTTGCAGCTATGATGGGATTTGGTGGTTTTCGGTCATCCAAGAAATGA 1131 0.4509 MYSECRRSGLDGPVPVQTREGHPKINWCFWNGLIEAELPHHAVRMVPFKDVKADKWQLCTPNIWVLIVVLRYFQGVGVQRIHPHEVHGRVGGLEPTMGSDPMPTCVPRSGNLRFPSVFCLSHCTAHDTSEPVLQNPNSTQGLAFAHQVVLAVGLCPNKTHKLLPNLGLYAHRPRITDMMVIEHFNSLREAYIGFFILPKEFSIEKLQSVTNLLSGLSQAHSLTLESQSIEWKDQIKLDSGSITYNDKPYTKSLKQRIGYVTQDDVVFPHLTVKETLTYVALLCLSMNLSRTQKKERAVNVLSEAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASIGQKEKEVEEAPETDPDVAAMMGFGGFRSSKK 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g3854 376 Gene3D - 208 343 IPR027417 -
Sto5g3854 376 PANTHER ABC TRANSPORTER G FAMILY MEMBER 22-LIKE ISOFORM X1 235 305 - -
Sto5g3854 376 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 343 IPR027417 -
Sto5g3854 376 SUPERFAMILY beta-beta-alpha zinc fingers 303 340 IPR036236 -
Sto5g3854 376 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 235 305 - -
Sto5g3854 376 SMART ZnF_U1_5 303 337 IPR003604 GO:0003676|GO:0008270
Sto5g3854 376 Pfam Zinc-finger of C2H2 type 306 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g3854 Sto-Chr5 46924145 46930282 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g3854 303 353 C2H2 Transcription Factor Family AT3G05760 76.471 2.84e-22 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g3854 K12848 - vvi:100263190 123.635