Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g3794 ATGGGTTATATATGTGATTTTTGTGGAGATCAGAGGTCTATGGTGTACTGCCGTTCAGATGCTGCATGCTTATGTTTATCATGTGATCGAAATGTTCATTCTGCTAATGCCCTATCTAGGCGTCATTCAAGAACCCTTTTATGTGAGAGATGCAATGCACAACCTGCTCTTGTACGGTGCTCCGAAGAGAGGATTACACTATGTCAGAACTGTGATTGGTTGGGCCATGGTACCTCAACATCTTCTTCAACACATAAGAGGCAAACAATCAATTGCTACTCCGGCTGCCCTTCAGCTGAAGAATTTTCTTCAATATGGTCATTTGCCTTAGATATCCCTTCTATGGGTGATTCTACCTGTGCACAGGAACTCGGTTTGATGAGCATTAATGAGAACAGCAGCTGTGCTCCTGAAAGCCAGATTGTATCTGGTTCAGCTCAAGTAACTAATATACATGGCATAAATAAATCTTGGGCCGGGGCCTCTTCAATGCCCGAATCAAGCTCAGAACCTCGTATTCCGGACCAGTCAACTGGACCTACCAATGAAAGTCTGCCCAAGTTATACTGTCCCAGTACAAAAGGTCCTTTTCCTTGTGAAGATGAACATGATGATCTGTATGGTGATTTTGACATGGATGAAGTGGATCTGAATCTTGAGAACTATGAAGAACTTTTTGGTGTGGCTCTTAGTCATTCTGAAGAGCTTTTTGAAAATGGTGGAATTGATAGCTTGTTTGGGACAAAGGATGTTTCTGCTGGTGATTCAAATTGTCAGGGTGCCGCTGCTGCAGAGGGTTCATCGATTGGACTGGTCAATACAATGCAACCAGCATGCAGCAATGCAGCATCGGCAGATTCCATTTTGAGTACTAAAACTGAACCGGTTCTTTGTTTCACCGGAAGGCAAGCCCAATCAACTCTTTCTTTTTCTGGGGTCACCGGAGAGAGCAGTGCTGGAGATCATCAAGACTGTGGAGCCTCTTCAATGCTTCTCGCGGGAGAGCCTCCTTGGTGTACTCCTTGCACTGAGAACTCCATACAATCTGCCAACCGCAGCAATGCTGTCTTGCGttataaggaaaagaagaagacacgCAAGTTTGAGAAGAAAGTGCGGTATGCCTCTCGCAAGGCAAGGGCTGATGTCCGGAGGCGCGTGAAGGGCCGATTTGTCAAAGCTGGGGAAGCCTATGATTATGATCCTTTGAGTGAAACCAGAAGCTACTGA 1230 0.4472 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNAQPALVRCSEERITLCQNCDWLGHGTSTSSSTHKRQTINCYSGCPSAEEFSSIWSFALDIPSMGDSTCAQELGLMSINENSSCAPESQIVSGSAQVTNIHGINKSWAGASSMPESSSEPRIPDQSTGPTNESLPKLYCPSTKGPFPCEDEHDDLYGDFDMDEVDLNLENYEELFGVALSHSEELFENGGIDSLFGTKDVSAGDSNCQGAAAAEGSSIGLVNTMQPACSNAASADSILSTKTEPVLCFTGRQAQSTLSFSGVTGESSAGDHQDCGASSMLLAGEPPWCTPCTENSIQSANRSNAVLRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAGEAYDYDPLSETRSY 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g3794 409 CDD Bbox1_BBX-like 4 47 - -
Sto5g3794 409 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Sto5g3794 409 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 409 - -
Sto5g3794 409 SMART bboxneu5 4 47 IPR000315 GO:0008270
Sto5g3794 409 CDD Bbox1_BBX-like 47 90 - -
Sto5g3794 409 MobiDBLite consensus disorder prediction 159 187 - -
Sto5g3794 409 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Sto5g3794 409 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 409 - -
Sto5g3794 409 ProSiteProfiles CCT domain profile. 352 394 IPR010402 GO:0005515
Sto5g3794 409 Pfam CCT motif 352 394 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g3794 Sto-Chr5 46096436 46100664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g3794 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 58.134 4.86e-157 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Sto5g3794 CCT 5.7e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g3794 - - gmx:100796748 649.047