Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g3782 ATGGGCCTCTCAAGTCTCCCTGCACCATCTGAAGGAATGTTGTGTATACTTCTGGTAAACACTGCCTTTTCCATATCCTTAGTTAAAGGCATTGTTAGAACAATCCTGCACATTGTTGGAATCAgtctttcatcatcatcatcacctccCACTCCATCATCCCCTCCACCCGAGATCCCTCCAAACCTGCCCGACTCATTCGAATTCGATCTCTGCACCTCGGACTATTGCATTGAAGAGTTCAGAAGCCGGACACCGACAATTCGGTTCGATAGTGTGTGTGGCTGCATACAAACTGACCATGAATGCACTGTTTGTCTGACTCAGTTCGAGCCGGATTCGGAGATAAACAGCCTCGCGTGCGGCCATGTCTTTCACAAAGATTGCTTGGAGAAGTGGTTGGGCTACTGGAACATCACATGCCCACTTTGCAGGACTCCATTACTGCCTGAAGAAGATACATCTTGTGTTTGGTAA 477 0.4528 MGLSSLPAPSEGMLCILLVNTAFSISLVKGIVRTILHIVGISLSSSSSPPTPSSPPPEIPPNLPDSFEFDLCTSDYCIEEFRSRTPTIRFDSVCGCIQTDHECTVCLTQFEPDSEINSLACGHVFHKDCLEKWLGYWNITCPLCRTPLLPEEDTSCVW 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g3782 158 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Sto5g3782 158 Pfam Ring finger domain 102 145 IPR001841 -
Sto5g3782 158 SUPERFAMILY RING/U-box 97 151 - -
Sto5g3782 158 PANTHER - 1 158 IPR044249 -
Sto5g3782 158 SMART ring_2 103 144 IPR001841 -
Sto5g3782 158 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 158 - -
Sto5g3782 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 157 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g3782 Sto-Chr5 45992243 45992719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g3782 1 158 C3H Transcription Factor Family AT2G04240 61.963 9.92e-58 176