Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g3764 CTGCCCCCAAAACAGACGGTGGTGCCTCCATCGAAGCCCTCCCTGAAGAAAGCCTCCGACACTTTCAGCCAACGCACCTCCGTCTATCGTGGCATCACAAGaggaggaggaggcgaCGGTGTAGGTTGTGTCGATGAAGATTCTAACAGCAATGGCATTCAAGATGATGACACGGAGTCTTGCTGCGAAAGCGGCAGCGGTGATGACGAGGACGATGTGGAGGAGGCGGAAGGATGGCGTAGGAAAATCTTTATTGGAGGATTAGCGAGAGATACCACCTTGGATACCTTCGTTAAGTACTTTGAGAAGTATGGAGAGATAACAGACTCGGTGATAATGAAAGATCGGCACACGGGTCGACCCAGGGGGTTCGGGTTTATTACCTACGCTGATCCTTCTGTTGTTGACCAGGTTATTCAGGAGGACCATGTGATCAATGGCAAGCAGGTTGAGATCAAGAGGACTATTCCGAAGGGTGCGGCCCAAGAGAATGATTTTAAAACCAAGAAGATTTTTGTTGGTGGTATACCATCTATGGTGACTGAAGAAGAGTTAAAGAACTTTTTTTCGAAGTATGGGAAGGTTGTGGAACATGAGATTATACGGGATCATACTACTAAGCGTTCTCGTGGTTTTGGATTTGTTGTGTTTGACAATGAAAAGGTTGTCGACAATATACTGACAAATGGAAATATGATTGATATGGCGGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACCCAGCACCTCATCCTCCATTTGGTAGTGATTCTAGGGCACGCCCATATGGTGATGCTTATGGTGGATTTGGCGATTCTTTTAGCAGTTTTGGCGGTGGAAGTTTTGGTCCTGCTCCTTATAGGTCCCTTGGAGGTTTTGGTGGTAGGCTTGGTGATTATGGTGGGTATGGTGGTGGAGATGACTTCGGTGGTAGTTTTGGGGGTTATGGTGGTAGTGGTTTTGCCGGCTACCGAGGAGACTCTTCATTTGGTTATTCTAGCCGCTATGGTTCCTATATGGGGAGCCTTGGTGCTGGAtatggtggtggtggcggcCTAGGTGCATATGGGCGAGGAAGTGGGAGCTATGAGAGCTATGGTGGCCCTGGCTCTGGTGGGGGTTATGACTCAGGTCCTAGTGCTGGTTATGGAGGGGCAGGAGGACTTTATGGTAGTAGGGGAAGTTATGGTGGCAGTAGTCGTTACCATCCTTATGCAAGGTAG 1239 0.4689 LPPKQTVVPPSKPSLKKASDTFSQRTSVYRGITRGGGGDGVGCVDEDSNSNGIQDDDTESCCESGSGDDEDDVEEAEGWRRKIFIGGLARDTTLDTFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDQVIQEDHVINGKQVEIKRTIPKGAAQENDFKTKKIFVGGIPSMVTEEELKNFFSKYGKVVEHEIIRDHTTKRSRGFGFVVFDNEKVVDNILTNGNMIDMAGTQVEIKKAEPKKSSNPAPHPPFGSDSRARPYGDAYGGFGDSFSSFGGGSFGPAPYRSLGGFGGRLGDYGGYGGGDDFGGSFGGYGGSGFAGYRGDSSFGYSSRYGSYMGSLGAGYGGGGGLGAYGRGSGSYESYGGPGSGGGYDSGPSAGYGGAGGLYGSRGSYGGSSRYHPYAR 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g3764 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 247 IPR000504 GO:0003723
Sto5g3764 412 SUPERFAMILY RNA-binding domain, RBD 78 159 IPR035979 GO:0003676
Sto5g3764 412 Gene3D - 160 282 IPR012677 -
Sto5g3764 412 SMART rrm1_1 82 153 IPR000504 GO:0003723
Sto5g3764 412 SMART rrm1_1 170 243 IPR000504 GO:0003723
Sto5g3764 412 PANTHER OS08G0320100 PROTEIN 81 412 - -
Sto5g3764 412 MobiDBLite consensus disorder prediction 243 265 - -
Sto5g3764 412 MobiDBLite consensus disorder prediction 1 75 - -
Sto5g3764 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 157 IPR000504 GO:0003723
Sto5g3764 412 MobiDBLite consensus disorder prediction 16 30 - -
Sto5g3764 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 231 IPR000504 GO:0003723
Sto5g3764 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 143 IPR000504 GO:0003723
Sto5g3764 412 Gene3D - 80 159 IPR012677 -
Sto5g3764 412 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 81 412 - -
Sto5g3764 412 SUPERFAMILY RNA-binding domain, RBD 162 276 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g3764 Sto-Chr5 45811203 45818352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g3764 83 233 Eukaryotic Initiation Factors Gene Family AT1G71770 27.811 2.97e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g3764 K12741 - gmx:100801373 352.829