Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g3698 ATGAATGATGGATTCGAAGCAGCTGCTACACCAAGAACAAAGGGGGCTAGAGGATGTCCAACCCGCAACCTACCTTTAGTAGAAAAATCCACAATTCAATCCAAAATGGAGAATGCAGGTGAGAAGATGAGGTTCATTGAAGACCCCAAAGCCAGAAACGAAACCTTCTTGAAGTTAaaggttgaaattttgaaagtttttagCGAGCTTTCTGCCGTTTGTGGAGCAGAGTTCACCGTTTTCTTTAATTTACCTTCGGGAGAAACTTACGCCTATGGCTACCCTTCTGTCGAGACCATTATTGACAGGTATTGTTCTACAAACCCTGTTACTACCGAAAAAGAAGAGGAGTCTCATTTACAAACTACAAAATCCAACTCTCAGACTCAGATTGGTTCTGATAAGGGAAAGAAACGTGTTTTTTATATGCAAGACTATGACTCGGGTGCCCAAGTTGAAGCTgagaacaagaaaatgaagaatcTTAGTAAAGAAGATTAA 501 0.3772 MNDGFEAAATPRTKGARGCPTRNLPLVEKSTIQSKMENAGEKMRFIEDPKARNETFLKLKVEILKVFSELSAVCGAEFTVFFNLPSGETYAYGYPSVETIIDRYCSTNPVTTEKEEESHLQTTKSNSQTQIGSDKGKKRVFYMQDYDSGAQVEAENKKMKNLSKED 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g3698 166 MobiDBLite consensus disorder prediction 1 22 - -
Sto5g3698 166 ProSiteProfiles MADS-box domain profile. 36 96 IPR002100 GO:0003677|GO:0046983
Sto5g3698 166 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 45 92 IPR002100 GO:0003677|GO:0046983
Sto5g3698 166 MobiDBLite consensus disorder prediction 113 136 - -
Sto5g3698 166 Gene3D - 48 130 IPR036879 GO:0003677|GO:0046983
Sto5g3698 166 SUPERFAMILY SRF-like 42 122 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g3698 Sto-Chr5 45019734 45021529 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g3698 46 130 Type I MADS-box Gene Family AT5G60440 33.333 1.32e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g3698 SRF-TF 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g3698 - - dzi:111308495 67.0106