Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g2888 ATGTTATCTGTTACTGACATGAATTCTTATACTCTTAAGGATTTGAAATGGAAATTTGAGCATAAACTTGGGGAGGCAGTGTTTATTCCTGCTGGATGCCCTCACCAAGTCAGAAATcttaagTTCTGGCAGCTTCCCAAGAACCACAAGGCCAGAGAAGATAAACTTGAGGTAAAGTAG 180 0.3889 MLSVTDMNSYTLKDLKWKFEHKLGEAVFIPAGCPHQVRNLKFWQLPKNHKAREDKLEVK 59
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g2888 59 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 17 41 IPR045109 GO:0032454|GO:0033169
Sto5g2888 59 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE 17 41 - -
Sto5g2888 59 SUPERFAMILY Clavaminate synthase-like 17 41 - -
Sto5g2888 59 Gene3D Cupin 4 53 - -
Sto5g2888 59 Pfam JmjC domain, hydroxylase 17 42 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g2888 Sto-Chr5 26420409 26420800 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sto5g2888 JmjC 2.2e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g2888 K15601 - gmx:100806419 73.559