Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g2823 ATGGAGAACTCGagtgagaagaagaagcaggGGATGATTCAAGACGTCCTCGAAGCTAGAAACGCCGCGTTCTTAAAGCTGAAGTCTGAAATTTTTGAAGAAGCTATCGAGCTTTCTATTCTGTGTGGAGCAGAGTTAGCCATTTTCCTCGCTTCCTCTTCCGGTGAAATTCATTGCTTCGCTAACCCTTTTGCTGATACCATAATTAACCGATATACTTCTACAAACATCGATACCATCATCAAAAAAGAAGGTGACTCTCCTTGTTCAAGCATGTCTCATTCGCAGACTCTGACTGATTGTGATAAGGATAAGCAACGTGATTTGGATGCTCAAGTGGAAGCAGAGAAAAGTaagaagTTGTTTGTTGTATTTTCTATGTAG 384 0.3828 MENSSEKKKQGMIQDVLEARNAAFLKLKSEIFEEAIELSILCGAELAIFLASSSGEIHCFANPFADTIINRYTSTNIDTIIKKEGDSPCSSMSHSQTLTDCDKDKQRDLDAQVEAEKSKKLFVVFSM 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g2823 127 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL61 16 120 - -
Sto5g2823 127 Gene3D - 17 120 IPR036879 GO:0003677|GO:0046983
Sto5g2823 127 SUPERFAMILY SRF-like 18 77 IPR036879 GO:0003677|GO:0046983
Sto5g2823 127 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 60 IPR002100 GO:0003677|GO:0046983
Sto5g2823 127 PRINTS MADS domain signature 26 41 IPR002100 GO:0003677|GO:0046983
Sto5g2823 127 PRINTS MADS domain signature 41 62 IPR002100 GO:0003677|GO:0046983
Sto5g2823 127 ProSiteProfiles MADS-box domain profile. 20 64 IPR002100 GO:0003677|GO:0046983
Sto5g2823 127 PANTHER MADS BOX PROTEIN 16 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g2823 Sto-Chr5 25260557 25261535 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g2823 20 107 Type I MADS-box Gene Family AT2G24840 27.660 2.93e-08 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g2823 SRF-TF 8.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g2823 - - mus:103978801 63.1586