Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g2822 ATGGAGAACTcgagtgagaagaagaagaagacgggCATGATTCAAGATGACCTCGAAGCTAGAAACGCCGCGTTCTTAAACCTGATGTCTGATATTTTCGAAGAAGCTATCGAGCTGTCTATTCTATGTAGAGCAGAGTTAGCAATTTTCCTCGCTTCCCCTTCCGGTGAAATTCATTGCTTCGCTAACCCTTCTGCTGATGCCATAATTAAACGATATACTTCTACAAACGTTGATACCATCGTCAAAAACGAAGGTGACTCTCCTTCTTGTTCAAGCATGTCTCATTTGCAGACTCTGACTGATTGTGATAAGGATAGGCAACGTGATTTGGAAGCTCAAGTGGAAGCAGAGAAAATTTTCAGTCACCTCTTGTTCCAATATATGATGGATAAGAGTTTAGAAATCTATAAataa 417 0.3741 MENSSEKKKKTGMIQDDLEARNAAFLNLMSDIFEEAIELSILCRAELAIFLASPSGEIHCFANPSADAIIKRYTSTNVDTIVKNEGDSPSCSSMSHLQTLTDCDKDRQRDLEAQVEAEKIFSHLLFQYMMDKSLEIYK 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g2822 138 Gene3D - 18 88 IPR036879 GO:0003677|GO:0046983
Sto5g2822 138 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 61 IPR002100 GO:0003677|GO:0046983
Sto5g2822 138 ProSiteProfiles MADS-box domain profile. 16 65 IPR002100 GO:0003677|GO:0046983
Sto5g2822 138 SUPERFAMILY SRF-like 17 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g2822 Sto-Chr5 25243900 25244938 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g2822 7 73 Type I MADS-box Gene Family AT2G34440 34.328 3.48e-09 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g2822 SRF-TF 4.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g2822 - K09264 lang:109341334 54.299