Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g2821 CTGGAGAACTcgagtgagaagaagaagaagcagggcATGATTCAAGATGACCTCGAAGCTAGAAACGCCACGTTCTTAAAGCTGAAGTCTGAAATTTTCGAAGAAGCTATCGAGCTTTCTATTCTGTGTGGAGCAGAGTTAGCCATTTTCCTCGCTTCCCCTTCCGGTGAAATTCATTGCTTCGCTAACCCTTCTGTTACTGCCATAATTAACCGATATACTTCTACAAACGTCGATACCATCATCAAAAAGGAAGGTGACTCTCCTTCTTGTTCAAGCATGTCTCATTCGCAGACTCTGACTGATTGTGATAAGGATAAGCAACGTGATTTGGATGCTCAAGTGGAAGCAGAGAAAATTTCCATTCACCTCTTGTTTCAATATATGATGGATAAGAGTTTAGAAATCTATAAATAA 417 0.3741 LENSSEKKKKQGMIQDDLEARNATFLKLKSEIFEEAIELSILCGAELAIFLASPSGEIHCFANPSVTAIINRYTSTNVDTIIKKEGDSPSCSSMSHSQTLTDCDKDKQRDLDAQVEAEKISIHLLFQYMMDKSLEIYK 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g2821 138 Gene3D - 18 97 IPR036879 GO:0003677|GO:0046983
Sto5g2821 138 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Sto5g2821 138 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Sto5g2821 138 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Sto5g2821 138 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 61 IPR002100 GO:0003677|GO:0046983
Sto5g2821 138 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Sto5g2821 138 PANTHER MADS BOX PROTEIN 11 120 - -
Sto5g2821 138 SMART madsneu2 5 64 IPR002100 GO:0003677|GO:0046983
Sto5g2821 138 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL61 11 120 - -
Sto5g2821 138 SUPERFAMILY SRF-like 14 81 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g2821 Sto-Chr5 25236781 25237819 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g2821 21 109 Type I MADS-box Gene Family AT2G24840 31.915 1.73e-11 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g2821 SRF-TF 8.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g2821 - - ming:122072200 67.3958