Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g2818 ATGTACCAAATGCTTGCTCCAAGTGTGAAAGAAGTCATGGAGGCAGACCGTGTTTGTTTGGACAAAGTGTTTGCTATAATTGTGGGAAATCCGGACACTTTGCTAAGGATTGTTCCCAGCCGAAGAAGACAGggTCACCCAACAATGGAGAACTCGagtgagaagaagaagcaggGCATGATTCAAGATGACATCGAAGCTAGAAACGTCGCGTTCTTAAAGCTGAAGTCTGAAATTTTCGAAAAAGCTATCGAGCTGTCTATTCTGTGTGGAGCAGAGTTAGCCATTTTCCTCGCTTCCCCTTCCGGTGAAATTCATTGCTTCGCTAACCCTTCTGATAATGCCATAATTAAACGATATACTTCTACAAACGTCGATACCATCATAAAAAAAGAAGGTGACTCTCCTTCTTGTTCAAGCATGTCTCATTCGCAGACTCTGACTGATTGTGATAAGCATAAGCAACGTGATTTGGATGCTCAAGTGGAAGCAGAGAAAAGTaagaaggttgaataa 516 0.3953 MYQMLAPSVKEVMEADRVCLDKVFAIIVGNPDTLLRIVPSRRRQGHPTMENSSEKKKQGMIQDDIEARNVAFLKLKSEIFEKAIELSILCGAELAIFLASPSGEIHCFANPSDNAIIKRYTSTNVDTIIKKEGDSPSCSSMSHSQTLTDCDKHKQRDLDAQVEAEKSKKVE 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g2818 171 PRINTS MADS domain signature 74 89 IPR002100 GO:0003677|GO:0046983
Sto5g2818 171 PRINTS MADS domain signature 89 110 IPR002100 GO:0003677|GO:0046983
Sto5g2818 171 MobiDBLite consensus disorder prediction 147 171 - -
Sto5g2818 171 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 54 170 - -
Sto5g2818 171 SMART madsneu2 44 111 IPR002100 GO:0003677|GO:0046983
Sto5g2818 171 ProSiteProfiles MADS-box domain profile. 63 112 IPR002100 GO:0003677|GO:0046983
Sto5g2818 171 MobiDBLite consensus disorder prediction 133 171 - -
Sto5g2818 171 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 64 108 IPR002100 GO:0003677|GO:0046983
Sto5g2818 171 SUPERFAMILY SRF-like 63 128 IPR036879 GO:0003677|GO:0046983
Sto5g2818 171 PANTHER MADS BOX PROTEIN 54 170 - -
Sto5g2818 171 Gene3D - 65 135 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g2818 Sto-Chr5 25176879 25181525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g2818 68 156 Type I MADS-box Gene Family AT2G24840 31.915 8.39e-10 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g2818 SRF-TF 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g2818 - - aof:109834815 66.6254