Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g2693 ATGCAGGCAGCAGCAGCTGACGTTGAGGCAGTGGACTTCGAGCCGGAGGACGATGACTTGATGGACGACGACGGCGGAGCTCCCGAGGGCTCCGCCTCTCCCCGTGCCCCTCCTCTCCCTAAGCTCAAATCTGCCATCACTGGCGGCGCTGCATCTTCCTCACTCGCTGCCCCTAAGAAGACCAAAGGTCGTGGTTTCCGTCATAATTCAGATGCCGATCGTAACAATCGCTTTACTGGCTCCGAGTTCGACTCTCTTACTACCGAGGGTGGTCCTGGTCCTCAACGATCCATTGAAGGATGGATTATTTTGGTTGCTGGGGTGCACGAGGAAGCACAAGAGGATGATCTGCAAAATGCATTTGGCGAATATGGAGAAATTAAGAATCTGCATTTGAATCTTGATCGTCGCACTGGTTTTGTCAAGGGTTATGCTCTGATTGAATATGAACATGCTGAGGAAGCCAGGAATGCAATAGAGAACTTGAATGGATCTGAACTTCTTACACAAACCATTTATGTTGATTGGGCTTTCAGCAACGGACCTATTAATGCATCAATCAGAAGAAAGAATGTTAGCAATCGCAAAATCACAATAGCTGATGGATCAGTTACCACTGTAGCTGGCCTAGGAAAtgtttgtttaaatgatcaTATCACTCTTAAAGATGTCCTTCATGTTCCTAAACTTTGCACTAACCTTATTTCTCTTCATAAGCTTACTAATGACTCCCAATGTAGTGCAATTTTTCATCCTACTCATTGTGTTTTCCAGGAACAAGGCACGAAGAGGATGATTGGACATGCTAAGGAGCGGAATGGTCTATATTATCTTGATACTTGTAATAAAGGACGTAGTGCTCAAAACCCTGCCTTCCAGCCTCAACAACCTTCTGATCCTCCTCAAATAAGTCCCGACCCAGACCTTAATTTGCAGACCAACCAGACTTTAGACTCTACTCGCCCATTACAAGTTTATTCTCGAAGAAAAGCTCCACCTCCTACAAGTGAGCCTGTCCAATCATCGCCTTCGGAGCCCCAAGATGTTGAGGTAATTGACTCATCTAGTCCTCATATACATGATTATGATGTTCCTATTGCTTTGAGAAAAGGAGGGCTATTTTTATACAAGAATAGGTTCAGTAATCTTGTGAGGGTTCTATCAATTTGGTGTAAGAGCGGTGAGATCCAGGAGAACAAGATGGAGAAGAGAATTGTAAGGGTGGAGAAAACGGTTTCAAGCCTAAAGGATGATATGAAGCAAATTAAAGAAGGGTTATGGGAGATTCTTGTAGCTCATGGAGGAGTGAACAACCATGATACCCAAGCAAGGGGAGGTGATAATGAGAAGAAGCTTGAGTTGAAGAATGAACTAGTTTTAATTGGTACCGTAGAAGAACTAAAACCAGAAGATAATGGCTTCACAATATCTATGGAGAGCCAAGAGAAGACAGTTGAAGCTTGGCCGCCATTGTGGGGTGAAACATTTAGTGCGTGCAAATGGAGGAGACAGCGTCAAACTTGGTTAACGGTAGAAGAAGGCAACGAGGGTAAAGGGAAGCATGGGAATTGGGTTGTGGATTGGCTATTAAAGTTAATGGGCTTGGCCTATGATACAAAGGAGGAAACCCTAATTTTAAAAGAGGCTAAGGTGGGAAGACCGAACCAAACTACAGAGCAGCGATATGAACAAGTCTTTGAACCATCACAGCTAATTGGAACACACAAGTCAGAACAGAAGCTTTCTCATCGTCCTACTTCTGTGCTTTCCCTTGACACTCAGATTATTCTCCAATATCAAACTACTCTGTGCTGCTTATTCTGGGCTCCAAACCTCTCTTCTGGTGAAGTAGATTACGAAGACAAAGGAAGTAAAGCAAGAAGAAAGGTGTTGGGGTTTCATGCCTGTTACTTTGAGAAATTTAGTGCAAGTCTTAAAAGCAAGAATAAAAAGCTAACAAAAGCCTTCAAGGTTCTGATTAAGAGGAAGGAGCTATTAGAATTTGGAAGCAATTGGGTAGCTTTGGAGATTAACCAAAGGCAGCATTCTTATACTAACTTTGAGGATAAGACTGCAATTGTAGCTGTGGAACTTTCTGTAGCTGCAATACTGGCCATAATGGTGGTTAAGGGTTGCAATTTAAAACATCACAAACCACCAGGAAACTTGGAGGATAATCGAGATTTGGAAATTAATGATCACAGCGCCGCTCAAGGAGCCCTCGGAGGAGGTTTTGACTGTGTGCAGTGA 2250 0.4333 MQAAAADVEAVDFEPEDDDLMDDDGGAPEGSASPRAPPLPKLKSAITGGAASSSLAAPKKTKGRGFRHNSDADRNNRFTGSEFDSLTTEGGPGPQRSIEGWIILVAGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYEHAEEARNAIENLNGSELLTQTIYVDWAFSNGPINASIRRKNVSNRKITIADGSVTTVAGLGNVCLNDHITLKDVLHVPKLCTNLISLHKLTNDSQCSAIFHPTHCVFQEQGTKRMIGHAKERNGLYYLDTCNKGRSAQNPAFQPQQPSDPPQISPDPDLNLQTNQTLDSTRPLQVYSRRKAPPPTSEPVQSSPSEPQDVEVIDSSSPHIHDYDVPIALRKGGLFLYKNRFSNLVRVLSIWCKSGEIQENKMEKRIVRVEKTVSSLKDDMKQIKEGLWEILVAHGGVNNHDTQARGGDNEKKLELKNELVLIGTVEELKPEDNGFTISMESQEKTVEAWPPLWGETFSACKWRRQRQTWLTVEEGNEGKGKHGNWVVDWLLKLMGLAYDTKEETLILKEAKVGRPNQTTEQRYEQVFEPSQLIGTHKSEQKLSHRPTSVLSLDTQIILQYQTTLCCLFWAPNLSSGEVDYEDKGSKARRKVLGFHACYFEKFSASLKSKNKKLTKAFKVLIKRKELLEFGSNWVALEINQRQHSYTNFEDKTAIVAVELSVAAILAIMVVKGCNLKHHKPPGNLEDNRDLEINDHSAAQGALGGGFDCVQ 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g2693 749 MobiDBLite consensus disorder prediction 10 25 - -
Sto5g2693 749 PANTHER RNA-BINDING PROTEIN 8A 1 190 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Sto5g2693 749 MobiDBLite consensus disorder prediction 1 94 - -
Sto5g2693 749 MobiDBLite consensus disorder prediction 286 356 - -
Sto5g2693 749 Coils Coil 398 418 - -
Sto5g2693 749 PANTHER RNA-BINDING PROTEIN Y14A-LIKE 1 190 - -
Sto5g2693 749 MobiDBLite consensus disorder prediction 305 323 - -
Sto5g2693 749 MobiDBLite consensus disorder prediction 64 78 - -
Sto5g2693 749 Gene3D - 50 188 IPR012677 -
Sto5g2693 749 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
Sto5g2693 749 PRINTS RNA binding motif protein 8 family signature 55 67 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Sto5g2693 749 PRINTS RNA binding motif protein 8 family signature 92 106 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Sto5g2693 749 PRINTS RNA binding motif protein 8 family signature 148 164 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Sto5g2693 749 PRINTS RNA binding motif protein 8 family signature 166 178 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Sto5g2693 749 CDD RRM_RBM8 95 182 IPR033744 GO:0003729
Sto5g2693 749 SMART rrm1_1 102 175 IPR000504 GO:0003723
Sto5g2693 749 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 172 IPR000504 GO:0003723
Sto5g2693 749 SUPERFAMILY RNA-binding domain, RBD 94 185 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g2693 Sto-Chr5 23613031 23627711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g2693 103 177 Eukaryotic Initiation Factors Gene Family AT4G34110 37.333 9.86e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g2693 K12876 - gmx:100527187 290.426