Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g2628 ATGGAGAACTCGagtgagaagaagaagcaggGGATGATTCAAGACGACCTCGAAGCTAGAAACGCCGCGTTCTTAAAGCTGAAGTttgaaattttcaaagaagCTATCGAGCTTTCTATTCTGTGTGGAGCAGAGTTAGCCATTTTCCTCGCTTCCTCTTCCGGTGAAATTCATTGCTTCGCTAACCCTTCTGCTGATACCATAGATAAGCAACGTGATTTGGATGCTCAAGTGGAAGCAGAGAAAAGTaagaaggttgaataa 264 0.3674 MENSSEKKKQGMIQDDLEARNAAFLKLKFEIFKEAIELSILCGAELAIFLASSSGEIHCFANPSADTIDKQRDLDAQVEAEKSKKVE 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g2628 87 Gene3D - 17 85 IPR036879 GO:0003677|GO:0046983
Sto5g2628 87 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 60 IPR002100 GO:0003677|GO:0046983
Sto5g2628 87 PRINTS MADS domain signature 26 41 IPR002100 GO:0003677|GO:0046983
Sto5g2628 87 PRINTS MADS domain signature 41 62 IPR002100 GO:0003677|GO:0046983
Sto5g2628 87 SMART madsneu2 4 63 IPR002100 GO:0003677|GO:0046983
Sto5g2628 87 ProSiteProfiles MADS-box domain profile. 15 64 IPR002100 GO:0003677|GO:0046983
Sto5g2628 87 SUPERFAMILY SRF-like 15 68 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g2628 Sto-Chr5 22760091 22760465 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g2628 7 68 Type I MADS-box Gene Family AT2G34440 37.097 2.69e-08 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g2628 SRF-TF 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g2628 - - sspl:121741253 53.9138