Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g2610 ATGGAGAACTCGagtgagaagaagaagcaggGGATGATTCAAGACGACCTCAAAGCTATAAATGCCGCGTTCTTAAAGCTGAAGTCTAAAATTTTGGAAGAAGCTATCGAGCTTTCTATTCTGTGTGGAGCAGAGTTAGCCATTTTCCTCGCTTCCTCTTCCGGTGAAATTCATTGCTTCGCTAACCCTTTTGCTGATACCATAATTAACCGATATACTTCTACAAACATCGATACCATCATCAAAAAAGAAGGTGACTCTCCTTGTTCAAGCATGTCTCATTCGCAGACTCTGACTGATTGTGATAAGGATAAGCAACGTGATTTGGATGCTCAAGTGGAAGCAGAGAAAATTTCCATTCACCTCTTGTTTCAATATATGATGGATAAGAGTTTAGAAATCTctaaataa 411 0.3698 MENSSEKKKQGMIQDDLKAINAAFLKLKSKILEEAIELSILCGAELAIFLASSSGEIHCFANPFADTIINRYTSTNIDTIIKKEGDSPCSSMSHSQTLTDCDKDKQRDLDAQVEAEKISIHLLFQYMMDKSLEISK 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g2610 136 PRINTS MADS domain signature 26 41 IPR002100 GO:0003677|GO:0046983
Sto5g2610 136 PRINTS MADS domain signature 41 62 IPR002100 GO:0003677|GO:0046983
Sto5g2610 136 Gene3D - 18 88 IPR036879 GO:0003677|GO:0046983
Sto5g2610 136 ProSiteProfiles MADS-box domain profile. 24 64 IPR002100 GO:0003677|GO:0046983
Sto5g2610 136 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 60 IPR002100 GO:0003677|GO:0046983
Sto5g2610 136 SUPERFAMILY SRF-like 21 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g2610 Sto-Chr5 22491285 22492321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g2610 15 102 MADS-box Gene Family AT3G57390 29.670 1.29e-07 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g2610 SRF-TF 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g2610 - - qsu:111983682 56.9954