Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g2575 ATGGAGAACTcgagtgagaagaagaagaagcagggcATGATTCAAGATGACCTCGAAGCTAGAAACGCCGCGTTCTTAAAGCTAAAGTCTGAAATTTTCGAAGAAGCTATCGAGCTGTCTATTCTGTGTGGAGCAGAGTTAGCCATTTTCCTCGCTTCCCCTTCCGAAGGTGACTCTCCTTCTTGTTCAAGCATGTCTCATTTGCAGACTCTGACTGATTGTGATAAGCATAAGCAACGTGATTTGGATGCTCAAGTGGAAGCAGAGAAAAGTaagaaggttgaataa 288 0.375 MENSSEKKKKQGMIQDDLEARNAAFLKLKSEIFEEAIELSILCGAELAIFLASPSEGDSPSCSSMSHLQTLTDCDKHKQRDLDAQVEAEKSKKVE 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g2575 95 SUPERFAMILY SRF-like 7 65 IPR036879 GO:0003677|GO:0046983
Sto5g2575 95 ProSiteProfiles MADS-box domain profile. 5 55 IPR002100 GO:0003677|GO:0046983
Sto5g2575 95 Gene3D - 17 95 IPR036879 GO:0003677|GO:0046983
Sto5g2575 95 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 55 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g2575 Sto-Chr5 22135856 22136230 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g2575 7 73 Type I MADS-box Gene Family AT2G34440 34.328 3.39e-06 41.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g2575 SRF-TF 8.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g2575 - - cit:102622305 43.1282