LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto5g2574	CTGGAGAACTCGagtgggaagaagaagaagcagggcATGATTCAAGATGACCTCGAAGCTAGAAATGCCGCGTTCTTAAAGCTGAAGTTTGAAATTTTCGAAGAAGCTATCGAGCTTTCTATTCTGTGTGGAGCAGAGTTAGCCATTTTCCTCGCTTCCCCTTCCGGTGAAATTCATTGCTTCGCTAACCCTTCTGTTACTGCCATAATTAACCGATATACTTCTACAAACGTCGATACCATCATCAAAAAAGAAGGTGACTCTCCTTCTTGTTCAAGCATGTCTCATTCGCAGACTCTGACTGATTGTGATAAGGATAAGCAACGTGATTTGGATGCTCAAGTGGAAGCAAAGAAAAGTaagaagTTTCCATTCACTCTTGTTTCAATATATGATGGATAA	402	0.3756	LENSSGKKKKQGMIQDDLEARNAAFLKLKFEIFEEAIELSILCGAELAIFLASPSGEIHCFANPSVTAIINRYTSTNVDTIIKKEGDSPSCSSMSHSQTLTDCDKDKQRDLDAQVEAKKSKKFPFTLVSIYDG	133

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto5g2574	133	PANTHER	MADS BOX PROTEIN	12	122	-	-
	Sto5g2574	133	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	19	61	IPR002100	GO:0003677\|GO:0046983
	Sto5g2574	133	SUPERFAMILY	SRF-like	7	81	IPR036879	GO:0003677\|GO:0046983
	Sto5g2574	133	Gene3D	-	18	98	IPR036879	GO:0003677\|GO:0046983
	Sto5g2574	133	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL61	12	122	-	-
	Sto5g2574	133	ProSiteProfiles	MADS-box domain profile.	5	65	IPR002100	GO:0003677\|GO:0046983
	Sto5g2574	133	PRINTS	MADS domain signature	42	63	IPR002100	GO:0003677\|GO:0046983
	Sto5g2574	133	PRINTS	MADS domain signature	27	42	IPR002100	GO:0003677\|GO:0046983
	Sto5g2574	133	SMART	madsneu2	5	64	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto5g2574	Sto-Chr5	22092653	22093669	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto5g2574	21	109	Type I MADS-box Gene Family	AT2G24840	30.851	4.80e-10	53.9

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Sto5g2574		SRF-TF	2.4e-09	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto5g2574	-		-	egt:105948920	65.855