Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sto5g2541 | ATGATTCAAGATGACCTCGAAGCTAGAAACGCCGCGTTCTTAAACCTGAAGTCTGATATTTTCGAAGAAGCTATCGAGCTGTCTATTCTATGTGGAGCAGAGTTAGCCATTTTCCTCGCTTCCCCTTCCGGTGAAATTCATTGCTTTGCTAACCCTTCTGTTGATGCCATAATTAAACGATATACTTCTACAAACGTTGATACCATCGTCAAAAAAGATGGTGACTCTCCTTCTTGTTCAAGCATGTCTCATTCGCAGACTCTGACTGATTGTGATAAGGATAGGCAACGTGATTTGGAAGCTCAAGTGGAAGCAGAGAAAATTTTCAGTCACCTCTTGTTCCAATATATGATGGATAAGAGTTTAGAAATCTATAAataa | 381 | 0.3963 | MIQDDLEARNAAFLNLKSDIFEEAIELSILCGAELAIFLASPSGEIHCFANPSVDAIIKRYTSTNVDTIVKKDGDSPSCSSMSHSQTLTDCDKDRQRDLEAQVEAEKIFSHLLFQYMMDKSLEIYK | 126 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sto5g2541 | 126 | ProSiteProfiles | MADS-box domain profile. | 4 | 53 | IPR002100 | GO:0003677|GO:0046983 | |
Sto5g2541 | 126 | PANTHER | MADS BOX PROTEIN | 5 | 107 | - | - | |
Sto5g2541 | 126 | Gene3D | - | 6 | 93 | IPR036879 | GO:0003677|GO:0046983 | |
Sto5g2541 | 126 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL61 | 5 | 107 | - | - | |
Sto5g2541 | 126 | SUPERFAMILY | SRF-like | 7 | 66 | IPR036879 | GO:0003677|GO:0046983 | |
Sto5g2541 | 126 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 7 | 49 | IPR002100 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sto5g2541 | Sto-Chr5 | 21527472 | 21528477 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sto5g2541 | 9 | 98 | Type I MADS-box Gene Family | AT2G24840 | 28.421 | 2.60e-10 | 54.3 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Sto5g2541 | SRF-TF | 1.1e-08 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sto5g2541 | - | - | vvi:104880554 | 63.929 |