Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g2541 ATGATTCAAGATGACCTCGAAGCTAGAAACGCCGCGTTCTTAAACCTGAAGTCTGATATTTTCGAAGAAGCTATCGAGCTGTCTATTCTATGTGGAGCAGAGTTAGCCATTTTCCTCGCTTCCCCTTCCGGTGAAATTCATTGCTTTGCTAACCCTTCTGTTGATGCCATAATTAAACGATATACTTCTACAAACGTTGATACCATCGTCAAAAAAGATGGTGACTCTCCTTCTTGTTCAAGCATGTCTCATTCGCAGACTCTGACTGATTGTGATAAGGATAGGCAACGTGATTTGGAAGCTCAAGTGGAAGCAGAGAAAATTTTCAGTCACCTCTTGTTCCAATATATGATGGATAAGAGTTTAGAAATCTATAAataa 381 0.3963 MIQDDLEARNAAFLNLKSDIFEEAIELSILCGAELAIFLASPSGEIHCFANPSVDAIIKRYTSTNVDTIVKKDGDSPSCSSMSHSQTLTDCDKDRQRDLEAQVEAEKIFSHLLFQYMMDKSLEIYK 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g2541 126 ProSiteProfiles MADS-box domain profile. 4 53 IPR002100 GO:0003677|GO:0046983
Sto5g2541 126 PANTHER MADS BOX PROTEIN 5 107 - -
Sto5g2541 126 Gene3D - 6 93 IPR036879 GO:0003677|GO:0046983
Sto5g2541 126 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL61 5 107 - -
Sto5g2541 126 SUPERFAMILY SRF-like 7 66 IPR036879 GO:0003677|GO:0046983
Sto5g2541 126 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 7 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g2541 Sto-Chr5 21527472 21528477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g2541 9 98 Type I MADS-box Gene Family AT2G24840 28.421 2.60e-10 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g2541 SRF-TF 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g2541 - - vvi:104880554 63.929