Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g2540 ATGATTCAAGACGACCTCGAAGCTAGAAACGCCGCGTTCTTAAAGCTGAAGTCTAAAATTTTGGAAGAAGCTATCGAGCTTTCTATTCTGTGTGGAGCAGAGTTAGCCATTTTCCTCGCTTCCTCTTCCGGTGACTCTCCTTGTTCAAGCATGTCTCATTCGCAGACTCTGACTGATTGTGATAAGGATAAGCAACGTGATTTGGATGCTCAAGTGGAAGCAGAGAAAAGTaagaaggttgaataa 246 0.4146 MIQDDLEARNAAFLKLKSKILEEAIELSILCGAELAIFLASSSGDSPCSSMSHSQTLTDCDKDKQRDLDAQVEAEKSKKVE 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g2540 81 MobiDBLite consensus disorder prediction 57 81 - -
Sto5g2540 81 Gene3D - 5 81 IPR036879 GO:0003677|GO:0046983
Sto5g2540 81 SUPERFAMILY SRF-like 5 53 IPR036879 GO:0003677|GO:0046983
Sto5g2540 81 MobiDBLite consensus disorder prediction 42 81 - -
Sto5g2540 81 MobiDBLite consensus disorder prediction 42 56 - -
Sto5g2540 81 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 7 44 IPR002100 GO:0003677|GO:0046983
Sto5g2540 81 ProSiteProfiles MADS-box domain profile. 4 44 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g2540 Sto-Chr5 21513924 21514258 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g2540 8 44 MADS-box Gene Family AT5G65080 43.243 4.67e-06 40.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g2540 SRF-TF 4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g2540 - - mbr:MONBRDRAFT_37624 41.2022