LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto5g2324	ATGGATCAACTCTCCGCGGGGCCTCTCGTCCCCGCCGTCAAATCCGATATCTCGAAGCCTCCCGCCGCCTCGGATCTCGCCGGAGCCGCCACTCCGTCCGGCGACACTTATCCGCCTGAGCCTTTCATGTCTGAGCCGGACAAGGACTTCTTGTGCCCGATTTGCATGCAGATCATCAAGGACGCCTTCCTCACTGCTTGCGGTCACAGCTTCTGCTACATGTGCATCATCACACACCTCCGCAATAAGAGTGATTGCCCTTGTTGCGGTCATTACCTCACCAGCAACCAGTTGTTCCCTAATTTCTTGCTTGATAAGCTACTAAAGAAGACCTCTGCTTGTCAAATATCAAAAACTGCCTCTCCTGTGGAACATTTTCGGCTGTCATTGCAAAAGGGTTGTAATGTGACAATTAAGGAGGTAGACACTCTCTTGTCACTCCTTgctgagaagaaaagaaaaatggagcAAGAAGAAGCTGAGAGAAATATGCAGATATTGCTAGACTTCTTGCATTGCTTAAGGAAGCAAAAAGTTGAAGAGTTGAAAGAGGTACAAACTGATCTCCAATTCATAAAGGAGGACATAAGTGCTGTGGATAAACATAGAATGGAGTTGTATCGTGCTAGAGACAGGTACTCAGTGAAATTGCGGATGCTTGATGAGTCTGGTTCAAGAAAAACTTGGCATTCAAACAGCAGTGGGCATATGTCTAGTCCTCTAAATGTGCGAGGAGGGTTATCTTCTGGGAGTCTTCCTAAGAAAATTGATGGAAAGTCCCATGTAAGCTCTCATGGAGTCCAGAGAAAAGATGTCGTTAGTGGATCAGACTCCCAATATATAAATCAATCCAGTCTTGCTCTAGTCAGAAAAAAGAGGGTGCATGCACAGTTCAATGACTTGCAAGAATGTTACCTACAAAAGCGACGTAATTCAGCAGATAAGCCTCATAGCCaacaagaaaaagataaaaacgTCATAAACCGAGAGGGTTATACTGCTGGTCTTTCAGAATTTCAATCAGTCTTGACAACTTTCACACAGTACAGTCGACTGAGAGTCATTGCTGAACTTAGGCATGGGGATCTATTCCATTCAGCCAACATAGTGTCAAGTATTGAGTTTGATCGTGATGATGAGTTGTTTGCTACTGCTGGAGTATCCCGACGCATAAAAGTTTTTGACTTCTCTGCAGTTGTTAATGAACCTACAGATGCACACTGTCCTGTTGTGGAGATGTCTACACGCTCAAAACTTAGTTGCTTGAGTTGGAACAAATATGCTAAGAATCACATAGCTAGTAGTGATTATGAAGGAATTGTAACTGTTTGGGATGTAACGACTCGGCAGAGTTTAATGGAATATGAAGAGCATGAAAAGAGGGCATGGAGTGTTGATTTTTCAAGAACAGATCCCTCTATGCTTGTTTCTGGAAGTGATGATTGTAAGGTAATCCAGGACTTCGTCAATTTCTCCCTGGCTAGCTTAAGTAATATCTGA	1500	0.4273	MDQLSAGPLVPAVKSDISKPPAASDLAGAATPSGDTYPPEPFMSEPDKDFLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTSNQLFPNFLLDKLLKKTSACQISKTASPVEHFRLSLQKGCNVTIKEVDTLLSLLAEKKRKMEQEEAERNMQILLDFLHCLRKQKVEELKEVQTDLQFIKEDISAVDKHRMELYRARDRYSVKLRMLDESGSRKTWHSNSSGHMSSPLNVRGGLSSGSLPKKIDGKSHVSSHGVQRKDVVSGSDSQYINQSSLALVRKKRVHAQFNDLQECYLQKRRNSADKPHSQQEKDKNVINREGYTAGLSEFQSVLTTFTQYSRLRVIAELRHGDLFHSANIVSSIEFDRDDELFATAGVSRRIKVFDFSAVVNEPTDAHCPVVEMSTRSKLSCLSWNKYAKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTDPSMLVSGSDDCKVIQDFVNFSLASLSNI	499

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto5g2324	499	SUPERFAMILY	WD40 repeat-like	368	485	IPR036322	GO:0005515
	Sto5g2324	499	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE COP1	4	484	-	-
	Sto5g2324	499	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE COP1	4	484	IPR042755	GO:0061630
	Sto5g2324	499	Pfam	Zinc finger, C3HC4 type (RING finger)	52	89	-	-
	Sto5g2324	499	SMART	WD40_4	406	445	IPR001680	GO:0005515
	Sto5g2324	499	SMART	WD40_4	448	486	IPR001680	GO:0005515
	Sto5g2324	499	SMART	WD40_4	351	395	IPR001680	GO:0005515
	Sto5g2324	499	MobiDBLite	consensus disorder prediction	224	276	-	-
	Sto5g2324	499	SMART	ring_2	52	89	IPR001841	-
	Sto5g2324	499	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	38	141	IPR013083	-
	Sto5g2324	499	Coils	Coil	175	195	-	-
	Sto5g2324	499	ProSiteProfiles	Zinc finger RING-type profile.	52	89	IPR001841	-
	Sto5g2324	499	MobiDBLite	consensus disorder prediction	226	246	-	-
	Sto5g2324	499	CDD	RING-HC_COP1	48	93	-	-
	Sto5g2324	499	SUPERFAMILY	RING/U-box	45	108	-	-
	Sto5g2324	499	ProSitePatterns	Zinc finger RING-type signature.	67	76	IPR017907	-
	Sto5g2324	499	Gene3D	-	338	486	IPR015943	GO:0005515
	Sto5g2324	499	MobiDBLite	consensus disorder prediction	1	39	-	-
	Sto5g2324	499	Coils	Coil	138	161	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto5g2324	Sto-Chr5	18267935	18280304	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto5g2324	50	103	C3H Transcription Factor Family	AT5G48655	38.889	1.76e-07	50.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto5g2324	K10143		-	gmx:100788171	820.846