Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g2298 ATGCACTCATTGCTCCTGCTTATCTTCATATTCTCTTTGAAAACTGATGTTTCGCCAACAAACACATCGAAGCACATTGAACTCTGCCGACGAAATGGGTTACTTAAGAAGGTTCAGGAACTTGCAATTCTTTGTGATGCTGAGGTTGGTGTTATAATCTTCTTTAACACACGAAAGCTCTTCGAGTTTTCCAATCCTGGATATTGCCCCGGTCGCTCGGCTTTTGAGAGCTGCTTGCCCCGCTACTCCACTTTGAAGCCGCTCACCTTTAGGGAGCCGCTCGCCTTGCTTGGCTCGTTTTGCCGAGCTGCTCGATCCATCGGTTCCACGTTTATCCGTATCCTTGGAAGAAAGCAAACATTTAAGGAGGAGCAAAATATAAAGGGAGAGAAGAGCTTCCTAGAGGACAAGAAGACAGAGATCAAGCGGCCACAGGAGCAATCAAGAGAGCAGCTTCGCGACGAAATGAAGCAACGACGAGCAACCAACAGCAGCACGACGGACCGACGCCGAACCGACTGCAAAACAGAAGCGGATCGAGCTGCAAAAAGAAGCAGAACAACTAACGGCGTGGCAAACGGCCAAAGGCAGCAACGGACGAGCGGCTCCCGAACCGAAACGGCGGAAACGAAGTGGAGCAAAGCCGAGCTCGCGCGGATCAACCCGAGCTAA 672 0.5074 MHSLLLLIFIFSLKTDVSPTNTSKHIELCRRNGLLKKVQELAILCDAEVGVIIFFNTRKLFEFSNPGYCPGRSAFESCLPRYSTLKPLTFREPLALLGSFCRAARSIGSTFIRILGRKQTFKEEQNIKGEKSFLEDKKTEIKRPQEQSREQLRDEMKQRRATNSSTTDRRRTDCKTEADRAAKRSRTTNGVANGQRQQRTSGSRTETAETKWSKAELARINPS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g2298 223 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Sto5g2298 223 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Sto5g2298 223 MobiDBLite consensus disorder prediction 135 223 - -
Sto5g2298 223 SUPERFAMILY SRF-like 30 76 IPR036879 GO:0003677|GO:0046983
Sto5g2298 223 SMART madsneu2 13 66 IPR002100 GO:0003677|GO:0046983
Sto5g2298 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 30 193 - -
Sto5g2298 223 MobiDBLite consensus disorder prediction 135 184 - -
Sto5g2298 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 30 63 IPR002100 GO:0003677|GO:0046983
Sto5g2298 223 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL16 30 193 - -
Sto5g2298 223 Gene3D - 28 144 IPR036879 GO:0003677|GO:0046983
Sto5g2298 223 MobiDBLite consensus disorder prediction 186 208 - -
Sto5g2298 223 ProSiteProfiles MADS-box domain profile. 30 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g2298 Sto-Chr5 17909120 17916854 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g2298 30 86 MADS-box Gene Family AT4G37940 50.877 2.88e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g2298 SRF-TF 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g2298 - K09264 jre:109008717 67.781