Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g2240 ATGCACTCGTCGCATCGACTCCTCCAAGACTCGGTTCAGGATCTCCTCCGAATCCGTAATATTTGTACGCGGAGCAGTCGAAAGTACATGAATGTTGTTGACAATGGAAGGAAGAAGTTGAgaattatgattagaatgatcTTGAAGCAGAGATTGAAGGCGAGACATAATATATTTGTTGAATTTGAGGAAGAtgacaattattattatgatcatGAAGATTGGTTCCAACCATCTGTGGGGCCACGAGATTCATCGTCCGAGAAAGTTATAGCATCGCTTAACAAAGTTGAAGTAATCAATTGCAAATCGGTTAAACAGTGCAGTATCTGTCTGGAAGATTTTAAGGGAGGCGACGATGTTTCAGGAATGCCGTGCAAACATGTCTTTCACAAAGATTGCATTGTACAATGGCTGAAGGAAAGTCATGTGTGTCCTTTGTGTCGTTTTCGAATGCCTGTTGTCAAGTGA 471 0.3907 MHSSHRLLQDSVQDLLRIRNICTRSSRKYMNVVDNGRKKLRIMIRMILKQRLKARHNIFVEFEEDDNYYYDHEDWFQPSVGPRDSSSEKVIASLNKVEVINCKSVKQCSICLEDFKGGDDVSGMPCKHVFHKDCIVQWLKESHVCPLCRFRMPVVK 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g2240 156 Pfam Ring finger domain 107 149 IPR001841 -
Sto5g2240 156 SMART ring_2 108 148 IPR001841 -
Sto5g2240 156 ProSiteProfiles Zinc finger RING-type profile. 108 149 IPR001841 -
Sto5g2240 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 155 IPR013083 -
Sto5g2240 156 PANTHER F6A14.12 PROTEIN-RELATED 43 153 - -
Sto5g2240 156 SUPERFAMILY RING/U-box 107 153 - -
Sto5g2240 156 SMART ringv_2 107 149 IPR011016 GO:0008270
Sto5g2240 156 CDD RING-H2_PA-TM-RING 107 149 - -
Sto5g2240 156 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 43 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g2240 Sto-Chr5 17207901 17210824 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g2240 83 154 C3H Transcription Factor Family AT1G26800 43.056 9.61e-15 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g2240 - K22378 fve:101301942 100.523