Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g2126 CTGGCGTCGCCGACGAGCTCGAGGTCGGTGACGGGGACGGTGAACGGCTCGCACAAGTTTGTGATTCAAGGGTATTCTCTGGCGAAAGGTATGGGAATTGGGAAGCACATTGCGAGCGATTTGTTCACGGTTGGAGGGTATGATTGGGCAATTTACTTCTACCCTGACGGCAAGAACCCCGAGGACAATTCAACCTACGTTTCAGCTTTCATAGCTTTGGCGAGCGAAGGCACCGATGTGAGGGCACTGTTTGAGCTCACGCTTGTAGACCAGAGTGGGAAAGGGAAGCACAAGGTTCACAGCCATTTTGATCGGTCCCTTGAGAGTGGTCCATATTCGCTAAAAGTCCCAGAATCTGATATTGGATCACAATTTGGTGTGCTATTGGAAAATATGGAAGGATCAGATATTACTTTCAATGTAGCTGGGGAAAAGTTCCCTGCTCATAAGTTGGTGTTGGCTGCTAGATCCTCAAAATTTCGATCCAGATTTTTTGATGGTTCAGCTGATGATACACAGGAGATTATCGTAACAGATTTAGAACCGAAGGTTTTTAAGGTTGATATGGCTCCATCAACCTCAACTAATGATTTCCCGGTGTCTGAGACATTGGCAGCAAAGTTGTTAGCTGCTGCAGATAAGTTTGACTTGGAGAGGCTTAAACTGATGTGTGAATCTCGTCTCTGCAAGGACATCTGTAAAGAAAAATGCCCATGGCTACAGTCAGAGATCCTAAAGACAATTGCAGGTTGTGAGAGTGATTGCACTAGTGCAGACGGGAAATCTCGGAGCGTGTGGGCTCAGCTTTCAGACGGTGGTGATTCAAATGGTAGGAGAGTCAGGCAGAGAATCTGA 855 0.469 LASPTSSRSVTGTVNGSHKFVIQGYSLAKGMGIGKHIASDLFTVGGYDWAIYFYPDGKNPEDNSTYVSAFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYSLKVPESDIGSQFGVLLENMEGSDITFNVAGEKFPAHKLVLAARSSKFRSRFFDGSADDTQEIIVTDLEPKVFKVDMAPSTSTNDFPVSETLAAKLLAAADKFDLERLKLMCESRLCKDICKEKCPWLQSEILKTIAGCESDCTSADGKSRSVWAQLSDGGDSNGRRVRQRI 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g2126 284 ProSiteProfiles BTB domain profile. 135 186 IPR000210 GO:0005515
Sto5g2126 284 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 14 126 IPR008974 GO:0005515
Sto5g2126 284 SMART math_3 20 132 IPR002083 GO:0005515
Sto5g2126 284 SUPERFAMILY POZ domain 113 230 IPR011333 -
Sto5g2126 284 SUPERFAMILY TRAF domain-like 13 102 - -
Sto5g2126 284 Gene3D Potassium Channel Kv1.1; Chain A 127 255 IPR011333 -
Sto5g2126 284 CDD MATH 16 113 IPR002083 GO:0005515
Sto5g2126 284 SMART BTB_4 135 232 IPR000210 GO:0005515
Sto5g2126 284 ProSiteProfiles MATH/TRAF domain profile. 15 139 IPR002083 GO:0005515
Sto5g2126 284 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 114 233 - -
Sto5g2126 284 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 3 115 - -
Sto5g2126 284 Pfam BTB/POZ domain 128 230 IPR000210 GO:0005515
Sto5g2126 284 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 114 233 IPR045005 GO:0016567
Sto5g2126 284 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 3 115 IPR045005 GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g2126 Sto-Chr5 16103410 16107510 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Sto5g2126 BTB 8.9e-17 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g2126 K10523 - gmx:100806769 422.165