Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g2100 ATGGTTGCCGCCAAGAAAACCAAGAAGACCCATGAGAGCATTAACAACAGGCTCGCTCTTGTGATGAAGAGCGGGAAATATACCCTCGGTTACAAAACGGTCCTGAAATCCCTGAGGAGCTCCAAAGGCAAATTGATTATTATTGCCAACAATTGCCCGCCTTTAAGGAAATCAGAGATAGAGTATTATGCTATGCTTGCCAAAGTAGGCGTGCATCATTATAATGGGAGAAAGGGCATGTTCACAGTTCATAGCCTGGCTTACTTGAGTGCTGCGTGTGATTTTGTATATGTGTATGAATACAACGTGGATTTGGGCACAGCTTGTGGCAAGTATTACAGAGTGTGTTGCCTGAGCATTATTGATCCTGGTGATTCGGATATTATCAAGACAATGCCTGGTGAACATTAA 411 0.4331 MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGRKGMFTVHSLAYLSAACDFVYVYEYNVDLGTACGKYYRVCCLSIIDPGDSDIIKTMPGEH 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g2100 136 Gene3D - 84 132 IPR029064 -
Sto5g2100 136 PANTHER RIBOSOMAL PROTEIN L30E-RELATED 1 89 - -
Sto5g2100 136 PANTHER RIBOSOMAL PROTEIN L30E-RELATED 98 136 - -
Sto5g2100 136 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 13 76 IPR004038 -
Sto5g2100 136 SUPERFAMILY L30e-like 7 130 IPR029064 -
Sto5g2100 136 PANTHER RIBOSOMAL PROTEIN L30 98 136 IPR039109 GO:0003723
Sto5g2100 136 PANTHER RIBOSOMAL PROTEIN L30 1 89 IPR039109 GO:0003723
Sto5g2100 136 ProSitePatterns Ribosomal protein L30e signature 1. 24 48 IPR022991 -
Sto5g2100 136 ProSitePatterns Ribosomal protein L30e signature 2. 104 124 IPR022991 -
Sto5g2100 136 Gene3D - 1 83 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g2100 Sto-Chr5 15848682 15851019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g2100 1 136 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 69.853 1.89e-64 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g2100 K02908 - rcu:8276054 212.231