Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g2087 ATGATGAATTTCCTTTTGACTTCTGATAAAGAAAAGGCTCAGCAGAATGGAAGTATCCATAGCTGCAACTATTGCGAAAGGGTGTTCAGCAGTCGTCAGGCACTTGGAAGCCATTTAAGGGTACATAAAAACCTTATTTGGAAAACTCCAAATTATCTTGGTCGCAACAATTCCATTGATGGGAACCATAATGCGAATGATAATAAATTCGTCATGTCTTCAAATCTTTCATATGGCACCAACCGTAATGCGTCCTCAAGAGCATTTTCGAGTCGTCCTATATACATAGGGGATCGAGAAGTCTTGACGGAAGTGCAGGGCACGGTCAAGAGGATGGCAGACATGGGAAGCAGCGTTAACGGtatggaaaaattaaataataataattataatacttgGTGTACACGTATGAGATTTTACCTGCTTAGTCAAGATTTATGGAGTCTTGTCGGAGGGGAAGAAACCCAACCTCCAACAGAAGGAGAAGATCTTAAGAAGTGGAAGGTTAGAGCGGGTAAGGCGATGTATGTGCTGTCGGTGACGGTGGAGGACGACATACTGCATCACATTAAGGAGGCGAAGACGCCCAAAGAAGCATGGGACACTCTCACAGGTTTGTACGCACGCACAAATGATGCTAAGCTCCAGCACCTGGAAAATGAATTGATGTCAATGTCGCAACAGAATATGACAATTGGTGAGTACTTTACCAAAGTTAAATCAATATGCCAAGAAATTTCTAAATTAGATCCTCAGAATCCTATAACGGAAACAAGGATGAGGAGGATCATTGTGCACGGGCTACGCCTTGAATTTCTTGGCTTAGTTACGGCTACTCGGGGTTGGGCAAAGGAACCAACCTTGATTGAGTTAGAAAATATCTTGGAAAATCAGGAGGCTTTAGACAAACAAATGTCTAAAGCATCTGTTCAAGAGGAAGATAAAGCCCTATTTAGTAGTAAAGGGGCTAAAGGGAGGGTCACAAAGAGTAGTGTGACCGAAGAACCGTCCAGGGGACGAGGTGGTTGGCGAGGCAGCCAACAGAGATGGAGCTCGAAGCCAGGGGGAGCTCAGCGAAGCCAAGATGAAGAGAGCCGTAACGAGAGACAGAAGTATCGACAGGAAAGTCGATGTTACAACTGCGGGAGAAAGGGCCATTTCGCCCGAGAGTGCTGGAGGCCAAAGCACATGGAAGGAAATGCGGTGACGTCTGCACAACAAACcagtaaagaagaagaatgggatTTTCAGGCTTCCTTTGCGACGACTGAAGAGGTAGAAGAGATGGCAACTTCTTGCATTGAGGAGATTGAAGAAACGTTGCAAGAAAAGGTAAGTGATCAAAACCTAGAAGCGAGTCTTGATGATGACCGTGATGAGATAAGTTGTCCGTGGGAGACTGAGAAATTTGGGATGCTAGACTGCAAACCTATCGCAACTCCGATGGAGGTGAATGCAAAATTATGTTCGGCCGAAGGAAAGAATTTAGAGGACGTCACAATGTACAGACAACTAGTGGGAAGCTTGATTTATCTAACGTTGACTCGACCAGACATCACATACGCTGTTGGAGTGGTAAGCAGATTTATGCAGAGTCCGAAGAAGCCTCATCTAGAAGCAATTCGACGAATTTTAAGCACAAGAATGCACGTGGCTAATGCAACTACTAAAGGACATACATCAATCGGTGGACTACCCAGTGGAGTTGTTTTGCGACAACCAATCAGCAATACCCTTAGCAGGGAATCCGGTATTCCACGCACGGACGAAACATGTGGAGGTACACTACCATTACATTCGGGAGAAGGCTCAACTGGATTTCACCATTCCAATGTTGAAGCAGTGCGATCTTTCATACGTCGTTTTCCATCTTTCTCGAGAAATTTGCTTCTTAAAAAGTATCATAACCAAAATCGCCATTCATATGCTTCAAGTGTCTTATGTTCCGCGTGTCGCTGCAGCATGAATAATTTTTCTGGGTTTAAGGATTTCAATCCTCATCCAGGGCTTGAAGTAAGTAAACTTGTTGACATGAAAAGGTCTGGTTTTGCAAACCTCTTAACTCCACAAGAAGCTAAGTTTGGTGGGTCATCATTTTATCGCGATGATAACATTAAGGGCAAAGCTGGTGCAAGCGTGAGGAAACGTTTCTTCTGTGAAGCTGCAACAAATGCTATCGAGGCTAATGCTCCGAAAAGGTCAAGGTTAAGATCTTTGTCACATGTTGGTTGGGAAAGAAATCTACCTACCATTGAGTTGCATCTCTTTAAGGATAAAAATAACTCTGTTGCAGTAACTAATGGAAAAGCAAAAGTAGATGAACCAAATATGGATCTCTCACATCACCTGTAG 2352 0.4303 MMNFLLTSDKEKAQQNGSIHSCNYCERVFSSRQALGSHLRVHKNLIWKTPNYLGRNNSIDGNHNANDNKFVMSSNLSYGTNRNASSRAFSSRPIYIGDREVLTEVQGTVKRMADMGSSVNGMEKLNNNNYNTWCTRMRFYLLSQDLWSLVGGEETQPPTEGEDLKKWKVRAGKAMYVLSVTVEDDILHHIKEAKTPKEAWDTLTGLYARTNDAKLQHLENELMSMSQQNMTIGEYFTKVKSICQEISKLDPQNPITETRMRRIIVHGLRLEFLGLVTATRGWAKEPTLIELENILENQEALDKQMSKASVQEEDKALFSSKGAKGRVTKSSVTEEPSRGRGGWRGSQQRWSSKPGGAQRSQDEESRNERQKYRQESRCYNCGRKGHFARECWRPKHMEGNAVTSAQQTSKEEEWDFQASFATTEEVEEMATSCIEEIEETLQEKVSDQNLEASLDDDRDEISCPWETEKFGMLDCKPIATPMEVNAKLCSAEGKNLEDVTMYRQLVGSLIYLTLTRPDITYAVGVVSRFMQSPKKPHLEAIRRILSTRMHVANATTKGHTSIGGLPSGVVLRQPISNTLSRESGIPRTDETCGGTLPLHSGEGSTGFHHSNVEAVRSFIRRFPSFSRNLLLKKYHNQNRHSYASSVLCSACRCSMNNFSGFKDFNPHPGLEVSKLVDMKRSGFANLLTPQEAKFGGSSFYRDDNIKGKAGASVRKRFFCEAATNAIEANAPKRSRLRSLSHVGWERNLPTIELHLFKDKNNSVAVTNGKAKVDEPNMDLSHHL 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g2087 783 Gene3D Classic Zinc Finger 2 75 - -
Sto5g2087 783 ProSiteProfiles Zinc finger C2H2 type domain profile. 20 42 IPR013087 -
Sto5g2087 783 Pfam gag-polypeptide of LTR copia-type 167 299 - -
Sto5g2087 783 Coils Coil 291 311 - -
Sto5g2087 783 ProSiteProfiles Zinc finger CCHC-type profile. 377 391 IPR001878 GO:0003676|GO:0008270
Sto5g2087 783 PANTHER - 175 453 - -
Sto5g2087 783 Pfam Domain of unknown function (DUF4219) 125 149 IPR025314 -
Sto5g2087 783 Gene3D - 355 436 - -
Sto5g2087 783 Pfam C2H2-type zinc finger 20 43 - -
Sto5g2087 783 SMART c2h2final6 20 42 IPR013087 -
Sto5g2087 783 SUPERFAMILY Retrovirus zinc finger-like domains 361 399 IPR036875 GO:0003676|GO:0008270
Sto5g2087 783 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
Sto5g2087 783 PANTHER - 175 453 - -
Sto5g2087 783 SUPERFAMILY beta-beta-alpha zinc fingers 18 44 IPR036236 -
Sto5g2087 783 Coils Coil 208 228 - -
Sto5g2087 783 MobiDBLite consensus disorder prediction 344 358 - -
Sto5g2087 783 SMART c2hcfinal6 377 393 IPR001878 GO:0003676|GO:0008270
Sto5g2087 783 MobiDBLite consensus disorder prediction 305 371 - -
Sto5g2087 783 Pfam Zinc knuckle 377 391 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g2087 Sto-Chr5 15742181 15747064 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g2087 471 545 Receptor kinase-like Gene Family AT4G23160 38.667 1.37e-12 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto5g2087 Retrotran_gag_2 2.2e-14 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g2087 - - egr:104438966 365.54