Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g2070 ATGGATTCGTTTGAGCCAGATGGTAATGGGTCAGAGGACACCTTGCCACCACCACCTCCCATTGTCCCATCAGATGTAGTACCCGTGAAAGCAGAACAAGAAATTCCAACTGAACCTGCGAAGAAAAAGGTTTCCCGGCTTCCAATTGCAAGGAAAAATTTGGGATCCAAAGGAAGTAAAATACCTATTCTTACTAATCACTTCAAAGTCAATGTTGGTAACCATGACGGCCATTTCTTCCACTACAGTGTATCATTTTCTTATGAAGATGGACGCCCTGTAGAAGGTAAGGGCGTCGGAAgaaaaataattgacagagtgcAGGAGACTTATGCCTCTGAGTTAGCTGGGAAGGACTTTGCCTATGATGGGGAGAAGAGTTTGTTTACTGTTGGCCCTCTTCCACGGAACAAGCTGGAATTCACTGTTGTTCTGGAGGATATCACATCAAGCAGaAATAATGGCAATAACAGCCCCGATGGTCACGGGAGTCCAAATGAGAGTGACAGGAAGAGGGTCCGGCGCCCATATCGGTCCAAAACATTTAAAGTGGAAATTAGTTATGCTGCCAAGATCCCTATGCAAGCTATTGCTAATGCACTGCGCGGTCAAGAATCTGAGAATTTCCAGGAAGCTGTTAGAGTGCTTGATATTGTATTAAGGCAACATGCTGCCAAGCAAGGTTGTTTGCTTGTTAGGCAATCTTTCTTCCACAACAATCCGAAGAACTTTGCCGATGTTGGAGGTGGGGTTCTAGGCTGCAGAGGATTCCATTCGAGTTTCAGATCTACACAAAGCGGATTGTCTCTCAACATAGATGTATCAACTACCATGATCATACAACCTGGGCCTGTGGTTGACTTCTTAATTGCCAACCAAAATGTGCGAGATCCTTATTCAGTTGACTGGGCAAAGGCCAAACGGATGCTTAAAAATCTTAGGATTAAAGCTAGCCCATCCAATCAAGAGTATAAGATAACTGGGCTGAGTGAACTCCCATGCAGAGAGCAGACGTTTTCTTTGAAGACCAAAGGTGGAAATGACGGTGATGATAGTGTTGAGGAAGTGACTGTTTATGATTATTTTGTTAATCATCGCAAGATAGATCTTCGTTATTCTGCTGATGTTCCATGTATTAATGTTGGGAAACCAAAACGTCCTACATACTTCCCTCTTGAGCTTTGCTCTTTGGTATCCTTGCAACGATATACCAAGTCACTGTCTACACTACAAAGGGCTTCACTGGTGGAGAAGTCTAGGCAGAAGCCGCAAGAGAGGATGAGGGTTTTGTCTGATACTTTGAGAAGCAGCAATTATGATGCTGAACCCATGCTTCGTAATTGTGGAGTTTCAATAAGCACTGGCTTTACTCAAGTGGAGGGTCGGGTTTTGCAAGCACCCAGGTTGAAGTTTGGCAACGGGGAGGACAATCCAAGAAATGGGAGATGGAATTTTAATAGTAAGAAAATAGCTCAGCCATCAAAGATAGAGCAATGGGCTGTGGTCAACTTTTCTGCACGCTGTGATACACGTGGCCTTGTTAGAGATCTGCTTAAATGTGCAGGAATGAAAGGAATTCCCATTGAAGACCCATTTGATGTATTTGAAGAAAATCCTCAGTTTAGGCGTGCTCCACCTGTGGTTAGAGTGGAGAAGATGTTTGAAGAGATTCAGTCTAAACTTCCTGGGCCTCCTAAGTTCCTTCTTTGTCTGCTTCCTGAGCGGAAGAACTCTGATCTTTATGGTCCATGGAAACGGAAAAATCTTGCTGAGTTTGGAGTTGTTACTCAGTGTATAGCCCCTACAAGGGTCAATGACCAATATCTAACTAATGTTTTGTTAAAGATCAATGCTAAGCTTGGTGGGCTGAATTCATTGTTATCAATTGAACATTCTCCATCTATTCCGATTGTTTCCAAAGCTCCCACCATCATTCTTGGTATGGATGTATCACATGGCTCGCCAGGGCAGTCTGATATTCCTTCAATTGCAGCGGTAGTGAGCTCCAGACAGTGGCCTCTGATATCAAAATATAGGGCATGCGTTCGTACTCAGTCTCCAAAGGTTGAAATGATAGATAATTTGTTCAAGCCAGTGTCTGAGAAGGAGGATGAAGGCATTATCAGGGAACTTATGATTGATTTCTATTTAAGTTCTGGGAAGAGGAAACcgcaaaatataataatattcagGGATGGTGTTAGTGAATCACAGTTCAATCAAGTCCTGAACATTGAACTCGATCAAATCATTGAGGCCTGCAAATTTCTTGATGAGCAGTGGTGCCCCAAGTTTGTGGTAATTGTTGCCCAAAAGAACCACCACACAAAATTTTTCCAGCCTTCATCTCCTGACAATGTTCCTCCTGGAACCGTTATTGATAATAAAATTTGTCATCCTCGGAATTACGACTTCTATTTATGTGCACATGCAGGAATGATAGGAACCAGCAGGCCCACACATTACCACGTTCTGCTAGATGAGATTGGTTTTTCAGCTGATGAGCTGCAGGAACTTGTGCATTCTCTATCATACGTCTATCAGCGGAGCACCACTGCCATATCTGTTGTTGCTCCAATATGCTATGCGCACCTGGCTGCAACTCAGATGGGACAGTTCATGAAATTTGAGGACAAGTCTGAGACTTCTTCGAGCCATGGAGGGGTGTCTTCTGCTGGTTCAGTTTCTGTCCCGCAGTTACCCAAATTGCAGGAGAAAGTCTGTGACTCAATGTTCTTCTGTTGA 2745 0.4306 MDSFEPDGNGSEDTLPPPPPIVPSDVVPVKAEQEIPTEPAKKKVSRLPIARKNLGSKGSKIPILTNHFKVNVGNHDGHFFHYSVSFSYEDGRPVEGKGVGRKIIDRVQETYASELAGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDITSSRNNGNNSPDGHGSPNESDRKRVRRPYRSKTFKVEISYAAKIPMQAIANALRGQESENFQEAVRVLDIVLRQHAAKQGCLLVRQSFFHNNPKNFADVGGGVLGCRGFHSSFRSTQSGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPYSVDWAKAKRMLKNLRIKASPSNQEYKITGLSELPCREQTFSLKTKGGNDGDDSVEEVTVYDYFVNHRKIDLRYSADVPCINVGKPKRPTYFPLELCSLVSLQRYTKSLSTLQRASLVEKSRQKPQERMRVLSDTLRSSNYDAEPMLRNCGVSISTGFTQVEGRVLQAPRLKFGNGEDNPRNGRWNFNSKKIAQPSKIEQWAVVNFSARCDTRGLVRDLLKCAGMKGIPIEDPFDVFEENPQFRRAPPVVRVEKMFEEIQSKLPGPPKFLLCLLPERKNSDLYGPWKRKNLAEFGVVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSLLSIEHSPSIPIVSKAPTIILGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYRACVRTQSPKVEMIDNLFKPVSEKEDEGIIRELMIDFYLSSGKRKPQNIIIFRDGVSESQFNQVLNIELDQIIEACKFLDEQWCPKFVVIVAQKNHHTKFFQPSSPDNVPPGTVIDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEIGFSADELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQMGQFMKFEDKSETSSSHGGVSSAGSVSVPQLPKLQEKVCDSMFFC 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g2070 914 SUPERFAMILY Ribonuclease H-like 551 873 IPR012337 -
Sto5g2070 914 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 913 - -
Sto5g2070 914 SUPERFAMILY PAZ domain 277 439 IPR036085 GO:0005515
Sto5g2070 914 MobiDBLite consensus disorder prediction 1 25 - -
Sto5g2070 914 Gene3D paz domain 276 403 - -
Sto5g2070 914 Pfam Piwi domain 568 875 IPR003165 GO:0003676
Sto5g2070 914 Gene3D - 463 628 - -
Sto5g2070 914 CDD Piwi_ago-like 443 869 IPR045246 -
Sto5g2070 914 ProSiteProfiles Piwi domain profile. 567 875 IPR003165 GO:0003676
Sto5g2070 914 CDD PAZ_argonaute_like 282 398 - -
Sto5g2070 914 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 2 913 - -
Sto5g2070 914 SMART Piwi_a_2 567 875 IPR003165 GO:0003676
Sto5g2070 914 Pfam PAZ domain 286 415 IPR003100 GO:0005515
Sto5g2070 914 MobiDBLite consensus disorder prediction 150 176 - -
Sto5g2070 914 Pfam Argonaute linker 1 domain 232 280 IPR014811 -
Sto5g2070 914 ProSiteProfiles PAZ domain profile. 324 399 IPR003100 GO:0005515
Sto5g2070 914 Pfam Argonaute linker 2 domain 425 471 IPR032472 -
Sto5g2070 914 Pfam N-terminal domain of argonaute 60 220 IPR032474 -
Sto5g2070 914 SMART DUF1785_2 230 282 IPR014811 -
Sto5g2070 914 Gene3D - 634 914 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g2070 Sto-Chr5 15590122 15596552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g2070 51 914 Eukaryotic Initiation Factors Gene Family AT5G43810 35.960 1.59e-167 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g2070 K11593 - jre:108989696 1561.97