Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g2065 ATGGCTAAAAAACGAAAGCTTCGATCATCTGAACCCGAATCTGCCAAAGTTGTTGATTCGCAGCCTGCACAGCAAGAACAAGCTCAAGAGCAACAAATCCATGAGGAAGCAACCCTAGAAGAACAGCACCAGGGACACGAGACTATGGCcgtggatgatgatgatgcgcAACGAGGAGATGTAAAATTAGAAGAAAACGCCGATGTCGGAGAACATCGAGGAGACGAACCTGAAGAGCAGGATGCCGAACATCCTGAAACGGCAGAAGCTTCGACCGATGCTGCCCCATCTGAATCAGCTCAGGTTGATGCAAATGGAGCTGAGGAAGGTAATGAGAACGATGATGACGGTGATGGTTTGGACGAAGAAGAGTCTGCGGAGAAGCTTCTTGAGCCATTTACGAAGGAGCAGTTGTACACTCTTGTCAAGCAAGCTGTGGAGAAGTACCCAGATTTTGTTGAGAACATTCGTCAGTTGGCGGATGTGGACCCTGCCCACAGGAAAATATTCATCCATGGTCTTGGCTGGGACACTACTGCTGAAACCCTTACTAGTGTGTTTGGGAAGTATGGTGAGATTGAGGATTGCAAGGCCGTCACGGACAAGATCTCTGGGAAATCCAAAGGCTATGCTTTCATCCTTTTCAAGCACCGGAGTGGGGCTCGTAAGGCGTTGAAGCAGCCTCAGAAGCAGATTGGGAGCCGAACTACATCGTGTCAATTGGCCTCCGCCGGACCAGTCCCCTCACCGGCAGTGACAGCTCCACCCGTGTCTGAATATACTCAAAGGAAGATCTTTGTTAGCAATGTTAGTGCAGAGCTTGATCCCCAAAAGTTGCTCGAATTCTTTAAGCAGTTTGGGGAGATAGAGGATGGTCCGTTGGGTCTTGATAAGCAGACGGGGAAGCCTAAAGGATTTGCACTGTTTGTATACAAGTCAGTAGAGAGTGCTAAGAAGGCTTTGGAAGAGCCGCACAAGAACTTTGAGGGGCATACATTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGAAACAAGGGATATCATCAGCACCAGCATCAgcaccatcaccatcaccattctcatcatcatcaacctCATTACCAGCCAAGaaaggagaaaaataaatatcaatctGGTGGGCCTGGACCAGGCTCCGGACACCTGATGGCACCATCGGCCCCTGCTTTCAATCCTGGAGTGGCTCCACAAGGATTAAACCCAGCACTTGGGCAGGCGTTGACTGCTTTGCTTACAACCCAAGGAGCTGGGTTAGGGCTGGGTAACCTGCTTGGAGGTCTTGGCGGTGCCCCAGCAAACCAGGCTGGGCCACCTGCTGGATATGGTAATCAGGCTGCTGTGGGCTACGGGAACCAGCCAGGAATGCAAGTGGGATACCAGAATCCACAAATGGGACAGAGCAGTGGTGTTAGGCCTCATCCCGGCGCTGGCGCTCCTTACATGGGTCACTAG 1473 0.484 MAKKRKLRSSEPESAKVVDSQPAQQEQAQEQQIHEEATLEEQHQGHETMAVDDDDAQRGDVKLEENADVGEHRGDEPEEQDAEHPETAEASTDAAPSESAQVDANGAEEGNENDDDGDGLDEEESAEKLLEPFTKEQLYTLVKQAVEKYPDFVENIRQLADVDPAHRKIFIHGLGWDTTAETLTSVFGKYGEIEDCKAVTDKISGKSKGYAFILFKHRSGARKALKQPQKQIGSRTTSCQLASAGPVPSPAVTAPPVSEYTQRKIFVSNVSAELDPQKLLEFFKQFGEIEDGPLGLDKQTGKPKGFALFVYKSVESAKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYHQHQHQHHHHHHSHHHQPHYQPRKEKNKYQSGGPGPGSGHLMAPSAPAFNPGVAPQGLNPALGQALTALLTTQGAGLGLGNLLGGLGGAPANQAGPPAGYGNQAAVGYGNQPGMQVGYQNPQMGQSSGVRPHPGAGAPYMGH 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g2065 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 333 IPR000504 GO:0003723
Sto5g2065 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 236 IPR000504 GO:0003723
Sto5g2065 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 341 IPR000504 GO:0003723
Sto5g2065 490 MobiDBLite consensus disorder prediction 108 122 - -
Sto5g2065 490 MobiDBLite consensus disorder prediction 14 32 - -
Sto5g2065 490 MobiDBLite consensus disorder prediction 348 370 - -
Sto5g2065 490 CDD RRM_RBM24_RBM38_like 263 338 - -
Sto5g2065 490 MobiDBLite consensus disorder prediction 339 400 - -
Sto5g2065 490 Gene3D - 254 385 IPR012677 -
Sto5g2065 490 SUPERFAMILY RNA-binding domain, RBD 249 361 IPR035979 GO:0003676
Sto5g2065 490 MobiDBLite consensus disorder prediction 33 88 - -
Sto5g2065 490 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 477 - -
Sto5g2065 490 MobiDBLite consensus disorder prediction 1 122 - -
Sto5g2065 490 SUPERFAMILY RNA-binding domain, RBD 155 245 IPR035979 GO:0003676
Sto5g2065 490 MobiDBLite consensus disorder prediction 470 490 - -
Sto5g2065 490 Gene3D - 159 245 IPR012677 -
Sto5g2065 490 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 477 - -
Sto5g2065 490 SMART rrm1_1 264 336 IPR000504 GO:0003723
Sto5g2065 490 SMART rrm1_1 168 240 IPR000504 GO:0003723
Sto5g2065 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 244 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g2065 Sto-Chr5 15537857 15539359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g2065 242 342 C2H2 Transcription Factor Family AT2G19380 28.713 1.79e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g2065 K12741 - gmx:100792637 577.4