Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1918 ATGGGAGACCACAACGATGCCTTCATGCGTAACCAGAACGCCGCCGTTCAGGCGCGTACCAAAGCACAGAACCGTTCCAACGTCCTCCAGCTCAAGCTGTCCTGTATAAAGATGAGGCTGGCTGATGTAGAGCTTAGATTTAGTTTAGATTTCATTTTTTCTATTATGCTTAAGATCGGACAGAGTCACCAGACTGGTCTCACAGCCAACCTTTTGAAGCTGTTTGAGCCCAGGCCTCCGTTAGAGTATAAACCACctccagaaaaaagaaaatgtccTCCATTAACAGGGATGGCACAATTTGTCGGTAAGTTTGCTGAGCCCGGAGATCCTGAATATGCTCCTCCTATCCAAGAAGCTGAAACGCCTGCCCAAAAAAGAGCTAGAATACACAAACTAAGATTAGAGAAAGGAGCAGCAAAGGTCGCAGAGGAGCTGGAGAAATATGATTCACATAATGACCCAAATATATCGGGAGATCCCTACAAGACCCTGTTTGTTGCAAGACTTGGTTATGAGACCACCGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGCTTGGTTACagacaaaaatacaaataagCCTAAGGGTTATGCATTCATCGAGTACCTGCACACAAGAGATATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGAGGGTAGAAGGGTGCTTGTGGATGTTGAACGTGGGAGGACTGTTCCTAATTGGAGACCTCGCCGACTAGGTGGTGGGCTTGGTACAACTAGAGTAGGGGGTTTAGAAATTAACACACCTGATTGGTTTATTGAAGGGAGCAACTGCAATCAGGATCCTCTCGTTCTGAAGAACCACAAGTGCGGGAGGAACGACAGGGTGATCGGGATAGAGAAAAATCTCGTGAAAGAGCTAGGGACAGAGACAGAGAACGGGAGCGGTCAGGTGAACGCTCTCATGACAGGACCCGTAGTCGTGACCATAGAGAGGATAAACACCACAGAGATCGGGAGAGGACTAGGGATAGAGACAGAGAAAGGGAGAGAGATCGTGGACGTGATCGAGATCGCGGACATGATCGTGATCGAGATCGTGGACATGATCGAGATCGTGATTCGGAGCGAGGCCGGGACCGTGACAAGGAGAGGGACCACGATAGGGACAGAGAATATGATTCCCATCGTGAAAGGGATAGAGATTATGATGTTGGGGACCTTGATTGGGGACGACCACATAGGGAGTCTGATCATGACGAGGATCTGGATCATTAATTCCCTAGCTGCAGCAATGAAGCCTTGA 1305 0.4674 MGDHNDAFMRNQNAAVQARTKAQNRSNVLQLKLSCIKMRLADVELRFSLDFIFSIMLKIGQSHQTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVGKFAEPGDPEYAPPIQEAETPAQKRARIHKLRLEKGAAKVAEELEKYDSHNDPNISGDPYKTLFVARLGYETTESRIKREFESYGPIKRVRLVTDKNTNKPKGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGLEINTPDWFIEGSNCNQDPLVLKNHKCGRNDRVIGIEKNLVKELGTETENGSGQVNALMTGPVVVTIERINTTEIGRGLGIETEKGREIVDVIEIADMIVIEIVDMIEIVIRSEAGTVTRRGTTIGTENMIPIVKGIEIMMLGTLIGDDHIGSLIMTRIWIINSLAAAMKP 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1918 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 234 IPR000504 GO:0003723
Sto5g1918 434 Gene3D - 150 268 IPR012677 -
Sto5g1918 434 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 59 267 - -
Sto5g1918 434 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 1 33 - -
Sto5g1918 434 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 66 154 IPR022023 -
Sto5g1918 434 PANTHER - 59 267 - -
Sto5g1918 434 PANTHER - 1 33 - -
Sto5g1918 434 CDD RRM_snRNP70 162 252 IPR034143 GO:0030619
Sto5g1918 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 241 IPR000504 GO:0003723
Sto5g1918 434 SUPERFAMILY RNA-binding domain, RBD 153 263 IPR035979 GO:0003676
Sto5g1918 434 SMART rrm1_1 164 237 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1918 Sto-Chr5 14267698 14273711 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1918 163 227 C2H2 Transcription Factor Family AT2G19380 35.385 1.89e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1918 K11093 - gmx:100800903 416.772