Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1900 ATGGTACCCActatcttcttccttcttctataCCTTCTCTTACTTCCAACGAATGGCTCTGCTCAAATTCATCAAGAAGAGGGTTTCATCTCGGCGGCCGTATCTGAAACTGGTCTTGATTACGCCAAAGATTTGCTGATACACAAAGCTATTTCCTCTATCCTTCAGCTCCAACTGCCGAAGATTGAAAAATCTGCGAGCGTCAGATTCGTTGGAAATTGCAGAATAGTCCTTTCCAATATTTCAATAACTGATGTTCGAATAGGCTCCTCGTATGTGAAGACGGGAGAGAAGGGTGTGACTCTAGTGGCTTCGGGTGCTACGGCTAATATGAGTATGAAATGGGGTTATTCTTGCAGTACTTGGTTGTTGCCTATTGCGGTTTCTGATAGTGGGGATGCCTCTGTGAAGGTTAAAGGTATGCAAATGGGCCTGACTGCAGATTTAAAGAACCAGGAAGGAACTCTTCAGTTGGTACTCTTAGATTATGGATGTTATGTGGGAGAATTGTCCATAAAGGTGGAAGGTGGAGCATCTTGGCTTTACCAAAGGATAGTGGACCTTTTTGGAGGGGAAATAGCATCTGCAGTAGAAAATAGCATTTCTGAGGAAATAAGAGAAGGGATATCAAAGCTTAACAATTCATTGCAGTCTCTTCCGAAACAAATCCCACTAGATGAAACTGCTGTACTAAACATTTCATTTGTGGACAATCCTGTTTTGACTAATTCTTCCATTGAGTTTGAAATTAATGGTCTATTCACAAGGAGAAATGAAGTTTTAGTATCTCAAGGTTACCACAGAGAATCAgatatttcttcttcttgtggTGGTTCGTTGGATATGATAAAGATTTCATTACATGAAGATGTTATAAAATCTGCTTCCTTAGTTTACTTCAATGCCATTGGCGATGGGGAGGGGAGTAAGAATATCAGGGCAGTTCATAGGGTGAAAGAGAAGGAGCAGGGAAACAAGCCTACATTTAAAAGAACCCTCAGAATATTTGTAGAAGATGGGGGAAAGAGGAGGGTTCAGTGGGAATTAGAAAGACAAGCTACAGAAGAGCCCCCCAAGAAAGGCGTTCCACTTACTACAGTTGAGCAGATATCCACGCAGGTTAAACAAGATGGAAGATTATTATGCTGGGTCCCACGAGCTCAGAGCCAGGTGCACCAAGGATCTAGTGTCCAAGAGACTAACGTTATGAAACGTGATGTCGGTGTTCAAACTGAGGAATATGAAATTGTGGTATTAGGGGATGTAAGAGGCGTTGAAttagcagggatgggagagaagGGAACTAAGGTGGGAGAGGGTGTGTCTAGAAGTGCGCCTTGCAAAGGGAAGGCGAAAATGGATGCTCAAGACAATACTATTGTTACTCTTAGGGATCCGAGTACCTCTGGTGGAACAAAATGCTTGGAACCAGAAACGGATTCTTCATCATCGGAGGCGGAAGAGGGGGAGTTCCTTGACGAGGCATCAATAATTTCCTTTTTCGATAATGAAGAGGGTCTCTTAATTGAGCAATTGGAGAAGGAGTATGAAGATCAAGAGAGAGATCAGAAGAGGAGACTTGATGACGGTCTTGAAGGGGTGGCTTCCCTCCTGGAAATGGATGGGGGTGAAGGCGATATTAGGCCCTCATTTTTTCCCATGGCAAGCATTGACGATCAGGCTCTTTTAAACACAGCTGGATGGCGATTCATAGTTCCTCAATTATACAAGAGATATCCGAATGATGAGATGAAGCTTAATATCTCAGTATCATCTCCGCCAATTGTAGAAGTCACCAACCAAGATATCAGTGCTACCATTTTTGTAGATCTAATAATTGATGTTCTGGATGCTGGTGATGTCATACCAGTTGCATGCATTTCAATGGAGATTAGTGCTTCATGTTCTGCAAAAATATTCAGAAACAACATTGCTGGTAGTCTCATATTGAACAATTTTTCCACATACTTAAAATGGAGCAAGATAGGTCGTCTTCACGAGCATCTGATCCAGCAAGGAAATGGGCATTCTACTACTGTTCAAGGGGCTGTGGATATGGTGCCAATTCAAAACAGAGATAGGgtcaaaatttacatttttcCTGGAATTTACAGAGAAAGAGTGTTTGTGCCAAGGACAAAGCCATATATCTCATTCAtagggaaagaaaatgaaacacATGGTGTGGTGATTACTTGGAATAGTAAGTCCTCAGATATAGGCTTCAATGGCCAAGCATTGGGCACTTATGGTTCAGCAACTGTAACTGTAGAATCTGATTATTTCTGTGCAAATAGGATCACTTTTGAGaatTCTGTAGTTGCAGTTCCAGGTGGGAGAGGAATGCAAGGAGTGGCAGTGAGGGTAGACAGTGAGAGAGCCATGTTCTATCAAGTTAAGTTCTTGGGAACACAAGACACCCTCTTGGATAACATAGGAACCCATTACTTCCTAAATTGTCTCATCCAAGgcaaaattgattttatttgtggCTCTGCAAAATCTCTCTATGagGATTGTCATCTGAGATCAATATCTGAGAACCATGGAGCAATTGCTGCTCATAGGAGGGATACACCATATGAAAACACAGGCTTCTCTTTTTTGGGCTGCTCAATAGAAGGAACAGGGAAGGTGTACCTTGGGAGGGCTTGGGGGAACTATTCAAGAATTATATATTCAAATTGTTACATGGAAGACATTATTACCCCTGAAGGATGGACTGAATGGAATCATCCCTCTAGAAAGATgaCAGCAGTTTTTGGGGAATTTCAGTGCCGTGGAAGAGGAGCTAATAGAAGTGGTAGGGTGCCATGGTCAAGATCTTTCAACTATGAGGAAGCAAGGCCTTTTCTCGACAAGAGCTTCATTAATGGGGATAATTGGCTTAGACTATAG 2898 0.4055 MVPTIFFLLLYLLLLPTNGSAQIHQEEGFISAAVSETGLDYAKDLLIHKAISSILQLQLPKIEKSASVRFVGNCRIVLSNISITDVRIGSSYVKTGEKGVTLVASGATANMSMKWGYSCSTWLLPIAVSDSGDASVKVKGMQMGLTADLKNQEGTLQLVLLDYGCYVGELSIKVEGGASWLYQRIVDLFGGEIASAVENSISEEIREGISKLNNSLQSLPKQIPLDETAVLNISFVDNPVLTNSSIEFEINGLFTRRNEVLVSQGYHRESDISSSCGGSLDMIKISLHEDVIKSASLVYFNAIGDGEGSKNIRAVHRVKEKEQGNKPTFKRTLRIFVEDGGKRRVQWELERQATEEPPKKGVPLTTVEQISTQVKQDGRLLCWVPRAQSQVHQGSSVQETNVMKRDVGVQTEEYEIVVLGDVRGVELAGMGEKGTKVGEGVSRSAPCKGKAKMDAQDNTIVTLRDPSTSGGTKCLEPETDSSSSEAEEGEFLDEASIISFFDNEEGLLIEQLEKEYEDQERDQKRRLDDGLEGVASLLEMDGGEGDIRPSFFPMASIDDQALLNTAGWRFIVPQLYKRYPNDEMKLNISVSSPPIVEVTNQDISATIFVDLIIDVLDAGDVIPVACISMEISASCSAKIFRNNIAGSLILNNFSTYLKWSKIGRLHEHLIQQGNGHSTTVQGAVDMVPIQNRDRVKIYIFPGIYRERVFVPRTKPYISFIGKENETHGVVITWNSKSSDIGFNGQALGTYGSATVTVESDYFCANRITFENSVVAVPGGRGMQGVAVRVDSERAMFYQVKFLGTQDTLLDNIGTHYFLNCLIQGKIDFICGSAKSLYEDCHLRSISENHGAIAAHRRDTPYENTGFSFLGCSIEGTGKVYLGRAWGNYSRIIYSNCYMEDIITPEGWTEWNHPSRKMTAVFGEFQCRGRGANRSGRVPWSRSFNYEEARPFLDKSFINGDNWLRL 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1900 965 Gene3D - 37 212 - -
Sto5g1900 965 CDD BPI1 29 255 - -
Sto5g1900 965 PANTHER OS06G0309200 PROTEIN 2 302 IPR045897 -
Sto5g1900 965 PANTHER OS06G0309200 PROTEIN 556 672 IPR045897 -
Sto5g1900 965 Gene3D - 681 962 IPR012334 -
Sto5g1900 965 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 560 672 IPR017943 GO:0008289
Sto5g1900 965 SUPERFAMILY Pectin lyase-like 672 963 IPR011050 -
Sto5g1900 965 Coils Coil 509 529 - -
Sto5g1900 965 Pfam LBP / BPI / CETP family, N-terminal domain 38 212 IPR017942 GO:0008289
Sto5g1900 965 MobiDBLite consensus disorder prediction 462 489 - -
Sto5g1900 965 MobiDBLite consensus disorder prediction 462 479 - -
Sto5g1900 965 Pfam Pectinesterase 671 960 IPR000070 GO:0030599|GO:0042545
Sto5g1900 965 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 32 243 IPR017943 GO:0008289
Sto5g1900 965 Pfam LBP / BPI / CETP family, C-terminal domain 559 671 IPR001124 GO:0008289
Sto5g1900 965 Gene3D - 546 680 - -
Sto5g1900 965 Gene3D - 213 304 - -
Sto5g1900 965 PANTHER LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 556 672 - -
Sto5g1900 965 PANTHER LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 2 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1900 Sto-Chr5 14025261 14054757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1900 671 916 Carbohydrate Esterase AT5G55590 59.756 2.49e-107 334