Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1888 ATGGCATCTTCGGATGATGAGGATGAGTTTCATCCACAATCAGTGTCGAATTACCATTTTGAAGATGACAAGGATGCGCCTGTTCCGATTTCTGCATTGCCAATTCAATGGAGTGAATCTGAGAATCTAGAGGGCAAGAAAGAGAAAGTATACCTTCATGGTTTTGCAGATAATGGGCTGCAGAAAGTATTTATGCAAGTCATTGCATGGAAGTTTGATATTTCCAATGTGAAACCTGAGATATCAGTGCTATCAAAGAATAGACGATGGATCAAACTTCAGAAGCCAAGGAAGAGCTTTGAGGATACCATAAGGACAATTTTAATCACTGTTCATTTCCTACATTACGTGGAGAAAAATCCTGAAGCATCTGCTAAATCTGCGTGGGATTACTTGTCTAAGGTTTTGAGCTGTTATGAGGTTAGGCCTTCACAAAGCGATTTGTTGAACCACTTGCCTTTAATTGATGAAGCTATTAAAAGGAATGCCATCTTAGCTAAATCCAAGCTTTTACTCACTGTTCTGGAGAAACAGCAGAATACGAAAGTATCTGATGAGGATGCTGATAATTTAGCAAGGCCTTCATTTATAGTTGACAATTTTGATGATGATACTATTGATGAAGCTGCTGAAGagtcagatgatgatgatgaccaaTTTGATTCTGTTTGTGCAATTTGTGACAATGGTGGTACATTGTTGTGTTGTGATGGAAAGTGCATGAGGTCATTCCATCCTACAAAGGAAGATGGTGCAGACTCGATGTGCGACTCTCTTGGTCTTACTCAGAAGGAAGTTGATGCTATCCAGAACTTCTATTGTAAAAATTGCGAGTATAATCAGCACCAGTGCTTTGTATGTGGCAAGTTAGGCTCCTCTGATAAATTCTTGGGTGCTGAGGTATTTCGCTGTGCTTCTGCAACTTGTGGGCGCTTTTATCATCCACATTGTGTTGCAAAATTACTTCACCTGGAAGATGAGCATGCTGCGAAGGaacttgagaaaaatattgCTGATGGAGAAACTTTTACTTGTCCTATTCATTATTGCTGCATCTGTAAACAAATAgaaaataagaaggaaaaagaattgCAATTTGCTGTTTGTAGGCGTTGTTCTAAGTCTTATCACCGTAAATGTTTGCCAAGCGAGATTGTTTTTGAAGGCAACGAGGAAGAAGGTATTATTATCAGAGCATGGGAAGATCTATTACCAAATAATCGCAtacttatatattgtttAGAACATGAGATTGATGATGAACTTGGAACTCCTATGAGAGATCATGTCAGATTTCCCAAAGTTAAACACAATGTTCGGGAAATTAATTCCTCCTTACAGGAAGAGGCAAAGCCTTCAACTCAAGAACGAGTTGTCTCGAAAAATATCAACCGCAAAAAAATTAATCCTAAAGTATCTAAAATGATTGGAAAATCGTCTTCTGGGAAACTTGGTGTCAAGAAAAATTCTGAAAAGATAATCTCTGGGTCAAATATCTCAAAGAAACGGAAAGCAAAGGAAACACCAGCACGACGCTTGAATGAAAATAAGAAGTCAAAGGTAATTGAAAAGATTGATGGTGAGGAGGGCCAACCCTCATTGGGTGAAAAACTATACGCTTTCATGACTAAAGATTCTGACAAAACTGATCGTGGGAAGCATGATGATAATGTAGCTAATAAGACCTTTCCTGTAAAGCCTACTAAAGTGGAGCCGAGTAGTACATTGCCTCAGTTAGATGCTGATTCAGAGCGGAGATTGCTGGCTTTATATAAAGAAGCTAGATCATCAATTACTTTGGAAGATGTCTTAGAAAAGCACAAACTTGCTTCTACTCATACTCAATCCTTACGAAATATTGTTGAGAAGACCATTACTGCGGGGAAGTTGGAAGGCTCAGTTGATGCTGTTCGAACAGCTCTAAGGAAGCTTGAGGATGGGAGAAGCATTGAAGATTCAGAAGCTGTTTGTGATCCAGATGTTTTGAGCCAGATATTTAAATGGAAGGACAAGCTGAAAGTGTATCTTGCACCTGCTCTGAATGGTAATCGCTACACATCCTATGGCCGCCATTTTACACAAGTGGAAAAACTGGAAGGGATTGTTGATAAACTCCATTGCTATGTGAAGAATGGTGATACAATTGTGGACTTCTGTTGTGGTGCTAATGATTTTAGCATCCTGATGAAGAAAAAGCTTGAAGAGACCGGGAAGAAATGCTTTTACAAAAACTACGATTTACTTCCAACAAAGATTATGGGCCTGAACCCCCCCTTTGGTCTTAAAGCAGTTTTGGCTAACAAGTTCATAGACAAGGCTCTTGAATTTCAACCGAAACTCATTGTTCTAATTGTTCCTCCAGAGACACAGAGGCTTGATAAAAAACGTACACCTTATGATCTTGTCTGGGAGGATGAGAAATTTCTATCAGGCaagTCATTTTATCTTCCTGGATCAGTTGATATTAATGACAGACAAATGGAACAATGGAATGTGAGGCCACCTCTACTTTATCTTTGGAGTCGTCGTGATTGGACTGATAAACACAAGGCTATAGCCAAGGATCATGGTCATATGCCCAGCCAACATGAAGTATTACCAAGGAGGAAAAGCTTTAATGCTGAAGTGTCACCTGCTGATCCTACTATGGATGATGGTAATCACGATGACGATCTTATGCTGGGTCATGATCTTTCGAAGACAGAAGATAATCCTGAAGGTGGTCAGGCTCCTATGAACGAAGATCAGATGGAAACCTTATTTTTTGGTAACAATGACCAAGAGAATCTAGTGGAACAGGAACAGGATCCAAGTTTAAACAAGTCTGACATCACAtcatggaagaaaaaaaattctgagGAAAATGATGGAAGGGGACGTGATGTAGTTTCACCAGCCAACAATACATATGATGGTGTAGAGAAGCATAGTCAAACTAAAGCATTTGATGGTAGATCCTCAATGGAAGGTCAACATAGTCATCCTAAAGCATTTGATGGTAGATCCTCAATGGAAAGTCAACATAGTCTACCTAAAGCATTTGATGGTAGATCCCCaatggaaggttttccatccaAGCCTGTTATCTCCCCGCCACATGTTGGCGTCGGTGATAATGCTTACCGGTACTACGAGCCCACCACTTGCTCACCCACGGAGTTTGCAGCAACCTATGGTGGGACCCAAAATTGGTCGACCGCTCCACCTTCTGATTACGGAGCTAGGAATTTTGAGGAACAGCATAACAGCTTTCTGGGAGACACCACTGGTAGCTTTGGATATAGACCCCATATCAGGGAGGAAGATAACTATTGGAAGGAATCTGATATAAGGCAACAGATTCGCATTTATGGGATTCAGGAACCTGAGTATATGAGAAGTGGCTATGTTACTGGTGATGATCCTACCTATGGCCAAATGAGGAATACTTATGGTCAACTCGGCTCGGTTCCCGAGTCATCTTACATGAATACACCTGCAATGCATCGATATGCTCCTCGTCTGGATGAATCAAACAATGCGAGAATGAGGAATTTTGGGTCAGAACCTCCAATTGCTGGTAGAAATGATAACCTTGAACGGAGTGTGCCACCACAATCTAGATATGGAAGTGGACCGGTGGGTTTTGCGCCTGGTCCTCACCACCTGCATTCCCGCCATAGCTCGGCCGGATGGCTCAATGAGTAG 3687 0.3984 MASSDDEDEFHPQSVSNYHFEDDKDAPVPISALPIQWSESENLEGKKEKVYLHGFADNGLQKVFMQVIAWKFDISNVKPEISVLSKNRRWIKLQKPRKSFEDTIRTILITVHFLHYVEKNPEASAKSAWDYLSKVLSCYEVRPSQSDLLNHLPLIDEAIKRNAILAKSKLLLTVLEKQQNTKVSDEDADNLARPSFIVDNFDDDTIDEAAEESDDDDDQFDSVCAICDNGGTLLCCDGKCMRSFHPTKEDGADSMCDSLGLTQKEVDAIQNFYCKNCEYNQHQCFVCGKLGSSDKFLGAEVFRCASATCGRFYHPHCVAKLLHLEDEHAAKELEKNIADGETFTCPIHYCCICKQIENKKEKELQFAVCRRCSKSYHRKCLPSEIVFEGNEEEGIIIRAWEDLLPNNRILIYCLEHEIDDELGTPMRDHVRFPKVKHNVREINSSLQEEAKPSTQERVVSKNINRKKINPKVSKMIGKSSSGKLGVKKNSEKIISGSNISKKRKAKETPARRLNENKKSKVIEKIDGEEGQPSLGEKLYAFMTKDSDKTDRGKHDDNVANKTFPVKPTKVEPSSTLPQLDADSERRLLALYKEARSSITLEDVLEKHKLASTHTQSLRNIVEKTITAGKLEGSVDAVRTALRKLEDGRSIEDSEAVCDPDVLSQIFKWKDKLKVYLAPALNGNRYTSYGRHFTQVEKLEGIVDKLHCYVKNGDTIVDFCCGANDFSILMKKKLEETGKKCFYKNYDLLPTKIMGLNPPFGLKAVLANKFIDKALEFQPKLIVLIVPPETQRLDKKRTPYDLVWEDEKFLSGKSFYLPGSVDINDRQMEQWNVRPPLLYLWSRRDWTDKHKAIAKDHGHMPSQHEVLPRRKSFNAEVSPADPTMDDGNHDDDLMLGHDLSKTEDNPEGGQAPMNEDQMETLFFGNNDQENLVEQEQDPSLNKSDITSWKKKNSEENDGRGRDVVSPANNTYDGVEKHSQTKAFDGRSSMEGQHSHPKAFDGRSSMESQHSLPKAFDGRSPMEGFPSKPVISPPHVGVGDNAYRYYEPTTCSPTEFAATYGGTQNWSTAPPSDYGARNFEEQHNSFLGDTTGSFGYRPHIREEDNYWKESDIRQQIRIYGIQEPEYMRSGYVTGDDPTYGQMRNTYGQLGSVPESSYMNTPAMHRYAPRLDESNNARMRNFGSEPPIAGRNDNLERSVPPQSRYGSGPVGFAPGPHHLHSRHSSAGWLNE 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1888 1228 CDD PHD_SF 349 381 - -
Sto5g1888 1228 MobiDBLite consensus disorder prediction 1 25 - -
Sto5g1888 1228 MobiDBLite consensus disorder prediction 946 960 - -
Sto5g1888 1228 MobiDBLite consensus disorder prediction 976 1001 - -
Sto5g1888 1228 Pfam Cytosine specific DNA methyltransferase replication foci domain 13 136 IPR022702 -
Sto5g1888 1228 PANTHER ENHANCED DOWNY MILDEW PROTEIN 1 1223 - -
Sto5g1888 1228 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1 1223 - -
Sto5g1888 1228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 280 IPR013083 -
Sto5g1888 1228 MobiDBLite consensus disorder prediction 875 913 - -
Sto5g1888 1228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 396 IPR013083 -
Sto5g1888 1228 CDD PHD2_NSD 283 348 - -
Sto5g1888 1228 MobiDBLite consensus disorder prediction 931 945 - -
Sto5g1888 1228 MobiDBLite consensus disorder prediction 931 1031 - -
Sto5g1888 1228 MobiDBLite consensus disorder prediction 545 576 - -
Sto5g1888 1228 MobiDBLite consensus disorder prediction 882 903 - -
Sto5g1888 1228 MobiDBLite consensus disorder prediction 1168 1228 - -
Sto5g1888 1228 SMART PHD_3 283 349 IPR001965 -
Sto5g1888 1228 SMART PHD_3 350 417 IPR001965 -
Sto5g1888 1228 SMART PHD_3 223 278 IPR001965 -
Sto5g1888 1228 MobiDBLite consensus disorder prediction 545 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1888 Sto-Chr5 13905988 13929377 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1888 212 318 PHD Transcription Factor Family AT3G14980 30.841 6.75e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1888 - - gmx:100803073 1399.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1888 5 13905988 13929377 Sto5g1888 5 13905988 13929377 ECH