LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto5g1886	ATGATGATGTTGAATTGGATATCTGAGGCAGCGACGAACCTCACACTCCAGCACGCGCTGGTGGTTCCGATTTCCCTCTTCGTCGCCGTTCTCTGCTTCTGCTTGCTCATCGGCCACTTGTTCGAAGAAAACCGCTGGGTCAATGAATCCATCGTCGCCATTCTAGTTGGATGCATTGCTGGAATGATACTCTTGTTTATCACCAAAGGGAAAAGTTCTCGAATCCTCACGTTCAACGAAGAACTATTCTTCGTATATCTCCTTCCACCCATAATATTCAATGCTGGATTTCAGGTGAAGAAGAAACAGTTCTTCCACAACTTCATAACCATCATGTTATTTGGGGTTATTGGTGTTTTTATTTCAACATTTATTATTACATCTGGCAGCTGGTGGCTATTCCCCAAGTTAAACTTTGTCGGTCTCAGTGGGCGAGACTATCTCGCTATAGGAGCAATTTTCTCTTCAACAGACACAGTTTGTACACTGCAGGTGCTCCATCAAGATGAGACTCCTTTGCTATACAGCCTAGTGTTTGGGGAAGGAGTGGTAAATGATGCAACATCAGTTGTTCTCTTCAATGCAGTGCAGAAGCTCGATGTTTCGAGACTCAATGGTAGATCTCTCCGAGTCATTGGAGATTTCTTGTATCTATTCTCATCAAGCACTGCTCTAGGATTCGTTGCTGGACTGCTCACAGCATACATCTTGAAAGCTTTAACCTTTGGAAGGCAAGTACCTTTCTGTCCAAAATGGTATTCTCAGAACAAActgatttgggaatgccaaaGACACTCGAGTGTTCGCGAAATTTCATTGATGGTTTTAATGGCATACCTCTCCTACACATTGTCAGAGTTACTAGAACTAAGTGGAATCCTCACAGTTTTCTTTTGTGGGATACTAATGTCACATTATGCATGGCATAATGTGACCGAAACTTCGAGAATTACGACCAGGCATGTCTTTGCGACAATGTCATTTATAGCAGAAACGTTTATATTTCTTTATGTGGGAATGGATGCTCTTGACATGGAGAAGTGGAGGATGACCAAATTAAGTTTTGGGAGCTTGATGGCAATTTACAGTTGCTTAATCTTCCTGATATTGCTCGGGCGGGCTGCATTTGTTTTCCCTCTCTCTGCTTTTGCCAATTGTTTGAACAGAGGTTCTGATAGAGCCTCAATTATCACATTTAAGCATCagGTAATCATCTGGTGGGCTGGACTTATGAGGGGAGCTGTATCCATTGCTTTGGCTTTCAAACAGTTCACATATTCTGGGGTTACTTCTGATCCTCTCAATGCAACAATGATTACCAACACCATTATTGTCGTCCTTTTCAGCACGGTGGTTGCCAATAAGTTAACCCAACTTGGTTGTGGTTCTAACTCTAGTGAGGTTTGGTTAGAGGATCATCCAAGTTGTATCTCTGATGTTCTTGCCTTAGATGGCTATGTGTTTGGTTTTCTCACAAAGCCACTGATACGCTATCTTCTTCCCCACCACAACACAAGAAGGAATAAGAACATAATCATCATCGAGGAGTCTGGTCCACCTCAGGAAGACTTGAATATGCCATTGCTATCTTTCGAGGAGTCAGCGGCAACCAACATCAGCCGCGCAAAGGAAAGCTTTTCAATGTTCATGGAAAGTCCTGTATACACCATTCACAAGTATTGGAGGATGTTTGATGATGCCTACATGAGACCTATATTTGGAGGCCCTCTTGCATCTCACTCACACACACAGTGCTAG	1758	0.4243	MMMLNWISEAATNLTLQHALVVPISLFVAVLCFCLLIGHLFEENRWVNESIVAILVGCIAGMILLFITKGKSSRILTFNEELFFVYLLPPIIFNAGFQVKKKQFFHNFITIMLFGVIGVFISTFIITSGSWWLFPKLNFVGLSGRDYLAIGAIFSSTDTVCTLQVLHQDETPLLYSLVFGEGVVNDATSVVLFNAVQKLDVSRLNGRSLRVIGDFLYLFSSSTALGFVAGLLTAYILKALTFGRQVPFCPKWYSQNKLIWECQRHSSVREISLMVLMAYLSYTLSELLELSGILTVFFCGILMSHYAWHNVTETSRITTRHVFATMSFIAETFIFLYVGMDALDMEKWRMTKLSFGSLMAIYSCLIFLILLGRAAFVFPLSAFANCLNRGSDRASIITFKHQVIIWWAGLMRGAVSIALAFKQFTYSGVTSDPLNATMITNTIIVVLFSTVVANKLTQLGCGSNSSEVWLEDHPSCISDVLALDGYVFGFLTKPLIRYLLPHHNTRRNKNIIIIEESGPPQEDLNMPLLSFEESAATNISRAKESFSMFMESPVYTIHKYWRMFDDAYMRPIFGGPLASHSHTQC	585

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto5g1886	585	Pfam	Sodium/hydrogen exchanger family	28	453	IPR006153	GO:0006812\|GO:0015299\|GO:0016021\|GO:0055085
	Sto5g1886	585	PRINTS	Na+/H+ exchanger signature	82	93	IPR004709	GO:0006814\|GO:0006885\|GO:0015385\|GO:0016021\|GO:0055085
	Sto5g1886	585	PRINTS	Na+/H+ exchanger signature	96	110	IPR004709	GO:0006814\|GO:0006885\|GO:0015385\|GO:0016021\|GO:0055085
	Sto5g1886	585	PRINTS	Na+/H+ exchanger signature	111	119	IPR004709	GO:0006814\|GO:0006885\|GO:0015385\|GO:0016021\|GO:0055085
	Sto5g1886	585	PRINTS	Na+/H+ exchanger signature	151	161	IPR004709	GO:0006814\|GO:0006885\|GO:0015385\|GO:0016021\|GO:0055085
	Sto5g1886	585	PANTHER	SODIUM/HYDROGEN EXCHANGER	263	458	-	-
	Sto5g1886	585	PANTHER	SODIUM/HYDROGEN EXCHANGER	484	583	-	-
	Sto5g1886	585	PANTHER	SODIUM/HYDROGEN EXCHANGER	10	244	-	-
	Sto5g1886	585	Gene3D	-	143	195	-	-
	Sto5g1886	585	PANTHER	SODIUM/HYDROGEN EXCHANGER	10	244	IPR018422	GO:0006812\|GO:0015299\|GO:0016021
	Sto5g1886	585	PANTHER	SODIUM/HYDROGEN EXCHANGER	263	458	IPR018422	GO:0006812\|GO:0015299\|GO:0016021
	Sto5g1886	585	PANTHER	SODIUM/HYDROGEN EXCHANGER	484	583	IPR018422	GO:0006812\|GO:0015299\|GO:0016021

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto5g1886	Sto-Chr5	13882004	13890729	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto5g1886	7	576	Antiporters	AT5G55470	63.986	0.0	729

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto5g1886	-		-	gmx:100813332	811.986

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto5g1886	5	13882004	13890729	Sto5g1886	5	13882004	13890729	ECH