Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1871 ATGTTCTTATTGGTTGCAGAACAGATGGAATCAGATCTCGGTAAACTCTTCATTGGAGGAATTTCTTGGGATACTGATGAAGAACGTCTTAAAGAATATTTTGGGAATTATGGAGAGGTGATAGAGGCCGTGATCATGAGAGATCGCACCACCGGTCGTGCTCGTGGTTTCGGTTTTGTTGTCTTTGCTGATCCTGCTGTTGCTGAACGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCCAGGGATGATCAGCATACAATAAATAGAAATTCTGGTAGTGTCCATGGGTCTCCTGGTCCTGGGCGCACGAAAAAGATTTTTGTTGGAGGTTTACCATCAACCATTACTGAAAGTGATTTTAAGAAGTATTTTGATCAGTTTGGTACTATTACTGATGTTGTAGTGATGTATGATCACAATACCCAGAGGCCAAGAGGCTTTGGCTTCATCACTTATGATTCAGAAGAAGCTGTGGACAGAGTTCTTTATAAAACATTTCATGAACTCAATGGAAAGATGGTTGAAGTCAAGAGGGCAGTTCCAAAAGAGCTTTCCCCTGGACCTACCCGGACCCCATTCATCGGATACAACTACGGTTTGAATAGAGCCAGTAACTATCTAAACAATTATGCTCAGGGATATAATATGAGTCCAATTGGAGGCTATAGATTGAGGATGGATGGTAGATTTAGTCCTGTTTCTGGTGGTAGAACTGGGTCCCCATTTGCCACAAGTGGTTATGGAATGGGAATGAATGTGGATGCAGGATTAAACCCAAGCTATGGCGGGACTTCCAATTTTGGAAACAGTCTAGGATATGGTCGGATTTTTAGTCCTTTCTATAGTGGCAACTCAAGCAGATACACAACTCCTATAGGATATAGTGGGGGTAATGGGAGAAGTGATTCTGTTATGAACTCGACTTCTCGGAGTGTCTGGGGAAATGGGGGTCTGAATCAAGCCAATAACCCGGTCAACCTCGGTGCTTACTTGGGATCTGGAGGCGGTGCTTTTGGTGTTTCGATTGGAAGTAGTGGAACAAATTGGGGTCAGTCCAATTCAATCCCGGGTGGAGGGGTTGGCTCTGGCTATGCCAATAGTGTTTATGAGGGTGGAGATAGCAGCTTCGGGTCAGGTGGTGGAGGGTATGGAAGAAATAGCAGTACAGGTGTGACTCCGTCCTCTTCATTTACTGCGTCTATTGGTGGTTATGAGGGAACCTATGGGGACTTATACCGCAGTGGTTCAGTTTACAATGACTCAACATGGCGGACTGCTGCTTCTGACCTAGATGGTTCTGGCTCATTTAGTTATGGACTTGATGGTCTAGCTTCGGAGGATCCAGTAAAGAATTCTGAGGGTTACATTGGAAACTACAATGTTACAAGTAGACAGCCTAATAGAGCTGAATTTGCTTGTGGTCATGCTGAGTCTTATCCTTTAATGGATTAG 1482 0.4406 MFLLVAEQMESDLGKLFIGGISWDTDEERLKEYFGNYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQHTINRNSGSVHGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRTPFIGYNYGLNRASNYLNNYAQGYNMSPIGGYRLRMDGRFSPVSGGRTGSPFATSGYGMGMNVDAGLNPSYGGTSNFGNSLGYGRIFSPFYSGNSSRYTTPIGYSGGNGRSDSVMNSTSRSVWGNGGLNQANNPVNLGAYLGSGGGAFGVSIGSSGTNWGQSNSIPGGGVGSGYANSVYEGGDSSFGSGGGGYGRNSSTGVTPSSSFTASIGGYEGTYGDLYRSGSVYNDSTWRTAASDLDGSGSFSYGLDGLASEDPVKNSEGYIGNYNVTSRQPNRAEFACGHAESYPLMD 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1871 493 Gene3D - 14 96 IPR012677 -
Sto5g1871 493 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 9 479 - -
Sto5g1871 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 191 IPR000504 GO:0003723
Sto5g1871 493 CDD RRM2_DAZAP1 112 191 IPR034131 GO:0003723
Sto5g1871 493 SUPERFAMILY RNA-binding domain, RBD 113 201 IPR035979 GO:0003676
Sto5g1871 493 SUPERFAMILY RNA-binding domain, RBD 8 112 IPR035979 GO:0003676
Sto5g1871 493 Gene3D - 113 193 IPR012677 -
Sto5g1871 493 SMART rrm1_1 115 187 IPR000504 GO:0003723
Sto5g1871 493 SMART rrm1_1 15 86 IPR000504 GO:0003723
Sto5g1871 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 90 IPR000504 GO:0003723
Sto5g1871 493 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 9 479 - -
Sto5g1871 493 MobiDBLite consensus disorder prediction 88 113 - -
Sto5g1871 493 CDD RRM1_hnRNPA_hnRNPD_like 16 86 - -
Sto5g1871 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 174 IPR000504 GO:0003723
Sto5g1871 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 83 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1871 Sto-Chr5 13779382 13783002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1871 13 188 Eukaryotic Initiation Factors Gene Family AT2G23350 23.596 7.94e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1871 K14411 - gmx:100805131 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1871 5 13779382 13783002 Sto5g1871 5 13779382 13783002 ECH