Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1868 ATGGACGCCGCTCCCAACCTTGTCGGGAACCTCTCCGGTTCGGAGCTCCGGCTCCGTGATCCCGACGACGGAGCATCCGGTGATCCGAATAAGTTCGGGCCGCGGCAGAATTCGGACGCCGGAGCGACTCACTACGGCACCGGAGGTGCGAGGTATAAGCTGATGTCGCCGGCGAAGCTTCCGATCTCGAGGTCGCCTTGTATTACGATACCGCCAGGGCTCAGTCCGACGTCGTTTTTGGAGTCCCCGGTGCTTCTGTCCAATATAAAGGTAGAGCCTTCGCCAACTACAGGATCTTTCACTAAGCCTCAAACAGTGCTGGGTTCTGTTGCTTCTGCCACATTTCCAGTAACAACTGCACACTTCAATACTAATACTGCTGATGACAGAAAATCTGCCATCTTTGAGTTTAGACCGTGCAGTAGTTCAGATATGGTTTCCACAGATTTTACCAACCATGTAAGTGAACAATCCATGCAAATAGATGGTGCTGGCCAAGCTCAATCATATGCCTCATCAACGTTAGTTAAAAGTGAGATAGCAGTGCCCTCGAATGACTTAAGTCTATCTTCACCTGTTCAAATGCCTGTTGAAGTTGATGTAGATGAATTTAGCCCCAGAGGAAATGCAGCCACTGGGCCTCAGCCATCTCAGGTTGAGGATAGAGGCAGTGGCCTTCCCGTTGCAGCTGAGAGAACACCTGATGATGGATACAATTGGCGAAAATATGGACAGAAACATGTTAAAGGAAGTGAATATCCACGCAGCTATTACAAATGCACGCACCCAAATTGTGAAGTAAAGAAATTATTTGAACGCTCTCATGATGGGCAAATCACAGAGATAATTTACAAAGGAAAACATGATCATCCTAAACCTCTACCTAACCGCCGATACTCTGCTGGTACTATAATTTCTTCTATGCAAGATGAAAGATCTGACAAGAATTTGTCAGCCAGCCAAGATGACAAAGCACCCAATATGTACAATCAAGTTTCTCAAAATGCTGATCCCAACAGTACTCCAGAGCTATCTCCTGTACCTGCAAATGATGATAGTCCAGAGGGCATTGGGTTAGTGTCAAATAGGGTTAATGACgaggttgatgatgatgatcccTTCTTAAAGCGAAGGAAAATGGACATTGGAAATGCTGACATCACTCCTATAGTCAAGCCTATCCGGGAACCACGGGTTGTTGTACAAACACTGAGTGAGGTTGACATATTGGATGATGGTTATCGCTGGCGTAAGTATGGGCAGAAGGTGGTAAGAGGCAATCCTAACCCTAGTTATGTAGTCAACATGGATGCATGGGTTGATAAAAGGTCTATACCTTGTATTGAAGTATACATAGATATGAGTTATTACAAATGCACAAATGCTGGTTGCCCCGTCAGGAAACACGTGGAGAGGGCATCTCATGATCCGAAAGCAGTAATAACCACATACGAGGGTAAACACAATCACGACGTGCCTATTGCAAGGAGTAGTAGCCATGACACAGCAGGACCAGCAGGCGGGGTTGGGCAGGCCAGAATTAGATCAGAAGAAAGTGATACTATCAGCCTTGACCTTGGGATGGGGATTAGCTCGGGTGCCGAAAATAGGTTGAACAGACAAGGGCAAATGCTGCTTCCTGAATTTGTTGGTAACAGTCAGACTCACTCCAGCAATTCCACTTTCAAGTTTGTTCATAATGCCCCAGCTCCAACTTATTTCAGTTCTCTTCATAATGGCTCTAATCCATATGGTTCTAGAGAAAATATGAGTGACACTCCATCTCTAAACCATTCCTCTTATCCGAACCCGCCACCAAACATCGGAAGAGTGCTCTATGGTCCTCGAAATTTACCCTGA 1860 0.4554 MDAAPNLVGNLSGSELRLRDPDDGASGDPNKFGPRQNSDAGATHYGTGGARYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVLLSNIKVEPSPTTGSFTKPQTVLGSVASATFPVTTAHFNTNTADDRKSAIFEFRPCSSSDMVSTDFTNHVSEQSMQIDGAGQAQSYASSTLVKSEIAVPSNDLSLSSPVQMPVEVDVDEFSPRGNAATGPQPSQVEDRGSGLPVAAERTPDDGYNWRKYGQKHVKGSEYPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGKHDHPKPLPNRRYSAGTIISSMQDERSDKNLSASQDDKAPNMYNQVSQNADPNSTPELSPVPANDDSPEGIGLVSNRVNDEVDDDDPFLKRRKMDIGNADITPIVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSYVVNMDAWVDKRSIPCIEVYIDMSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPIARSSSHDTAGPAGGVGQARIRSEESDTISLDLGMGISSGAENRLNRQGQMLLPEFVGNSQTHSSNSTFKFVHNAPAPTYFSSLHNGSNPYGSRENMSDTPSLNHSSYPNPPPNIGRVLYGPRNLP 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1868 619 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 455 594 - -
Sto5g1868 619 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 40 431 - -
Sto5g1868 619 MobiDBLite consensus disorder prediction 306 347 - -
Sto5g1868 619 Gene3D WRKY domain 395 494 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sto5g1868 619 Gene3D WRKY domain 228 294 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sto5g1868 619 SMART WRKY_cls 410 492 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto5g1868 619 SMART WRKY_cls 234 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto5g1868 619 MobiDBLite consensus disorder prediction 579 619 - -
Sto5g1868 619 MobiDBLite consensus disorder prediction 306 371 - -
Sto5g1868 619 MobiDBLite consensus disorder prediction 1 45 - -
Sto5g1868 619 MobiDBLite consensus disorder prediction 579 604 - -
Sto5g1868 619 SUPERFAMILY WRKY DNA-binding domain 232 293 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sto5g1868 619 MobiDBLite consensus disorder prediction 204 238 - -
Sto5g1868 619 MobiDBLite consensus disorder prediction 490 517 - -
Sto5g1868 619 ProSiteProfiles WRKY domain profile. 405 493 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto5g1868 619 SUPERFAMILY WRKY DNA-binding domain 402 493 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sto5g1868 619 Pfam WRKY DNA -binding domain 411 431 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto5g1868 619 Pfam WRKY DNA -binding domain 235 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto5g1868 619 Pfam WRKY DNA -binding domain 454 490 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto5g1868 619 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 40 431 IPR044810 GO:0003700
Sto5g1868 619 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 455 594 IPR044810 GO:0003700
Sto5g1868 619 ProSiteProfiles WRKY domain profile. 229 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1868 Sto-Chr5 13751488 13756511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1868 55 615 WRKY Transcription Factor Family AT4G26640 54.482 9.94e-180 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sto5g1868 WRKY 1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1868 - - gmx:547723 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1868 5 13751488 13756511 Sto5g1868 5 13751488 13756511 ECH