LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto5g1866	ATGGATATCTCCGACCTTAGAGAAGTGGATGAAACTTGTAACCTAGATTGGGAAAAAGCTTTGAGTCAGTTTCAGAATGTGATGGTCTCAGGAACCATGGGTATGCAAATAaaagccatgattatgcttgCCCATCAATCCAAACATGCTCCTGAGAGTGTATTATCTCGCATCATACCTCACCTCACTGGGATTCTTGGTGATTACCAATCTAATCAATCATCAGGTTTTTCTCTTCAAAAGGCTTCTGCTTATTGCTTGAAGTGTATAGCTTCTCGAGGTGATGGTGAGTTGGCAATGGAAATAGGTAGACATGGTGCTGCAACTTCTCTACTAAGGTGGTTGTCCCATTCTGATGGGGAGTTCCAAGAAGTCTTGATAAAATGTTTACTTGTTGTTGTCACTTTTTCGAACCGGAGTCGTGCCGCGGTAGCTAGCAGTGGAGGGCTAGAGATTATCATCAGTTTGTTAGATTTATGTACAGATGATGATATTAGGTTATACCTGTTGGAAATTTTGAGTGCATTGGCTTTGCTGAAGGATGTTAGGAGGGCACTTGCAAGATTCGGAGGTCTTCACTTGCTTGTGGAGGCTGCTAGTAGTGGCACCATGGTCTCTAGGGAAAGGGCTTGTCAAGCAATTGGGTTACTTGGGGTCCCAAGACGGTCGAGGCGAATGCTTATCGAAATTGGAGTGATACCGGTGCTTGTTGAGTTGCTTAGTGAAGGAGATGAAACCACAAAACTTGTGGCTGGTAATGCCCTTGGTGTGATCTCTGCTCATGTTGATTACATTAGACCAGTTGCTCAAGCTGGGGTTATCTCTCTTTATGCTGAGCTTCTTCAAGGACTTGAACGTACCGGCAAGGATATCGCGGAGGATGTGTTTTGTATATTGGCTGTTGCAGAGGAGAATGCAATTGAAATTGTGGGACATTTGGTGAGAATTCTTAGAGAAGGTGATGAGGAATCAAAGGCGTCTGCTGCTGAGGTGATGTGGGATCTCTCGGGTTATAAACATTCGGCATCTGTGATCCAGGAGTCGGGTGCGATTCCAATCCTAATTGAGCTTTTGCGGAGTGAAACTGAAGAGGTAAGGCAGAATGTTTCTGGGGCATGTGCTCAGCTGAGTTATGAAGAAGCAGATAGAATGGCACTTGCTGAAGCAGGGGCTATTCCTATTCTCATAGACATGATGCTGCACGATGAGCTCGAGGATGTAAGGGATAATGCAGCAGAGGCTCTTATCAATTTCGCCGGCGATCCTTTGTACAATAATAGAGTATCTGATGCAATTAGTTTTCCTTCATTTAGAGAGATACAGAACAGAATAACTTTCATCCGCGCTTCGAACGAACATATGGCTAGATCGATGCGAAGGATGAGTGATTGGCAGCTCACTTGGAACCCGGATCATGTTTAA	1422	0.4395	MDISDLREVDETCNLDWEKALSQFQNVMVSGTMGMQIKAMIMLAHQSKHAPESVLSRIIPHLTGILGDYQSNQSSGFSLQKASAYCLKCIASRGDGELAMEIGRHGAATSLLRWLSHSDGEFQEVLIKCLLVVVTFSNRSRAAVASSGGLEIIISLLDLCTDDDIRLYLLEILSALALLKDVRRALARFGGLHLLVEAASSGTMVSRERACQAIGLLGVPRRSRRMLIEIGVIPVLVELLSEGDETTKLVAGNALGVISAHVDYIRPVAQAGVISLYAELLQGLERTGKDIAEDVFCILAVAEENAIEIVGHLVRILREGDEESKASAAEVMWDLSGYKHSASVIQESGAIPILIELLRSETEEVRQNVSGACAQLSYEEADRMALAEAGAIPILIDMMLHDELEDVRDNAAEALINFAGDPLYNNRVSDAISFPSFREIQNRITFIRASNEHMARSMRRMSDWQLTWNPDHV	473

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto5g1866	473	PANTHER	U BOX DOMAIN-CONTAINING	8	469	-	-
	Sto5g1866	473	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 10-LIKE	8	469	-	-
	Sto5g1866	473	Pfam	HEAT repeats	312	415	-	-
	Sto5g1866	473	SUPERFAMILY	ARM repeat	60	419	IPR016024	-
	Sto5g1866	473	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	349	391	IPR000225	GO:0005515
	Sto5g1866	473	Gene3D	-	305	433	IPR011989	-
	Sto5g1866	473	Gene3D	-	16	304	IPR011989	-
	Sto5g1866	473	SMART	arm_5	379	420	IPR000225	GO:0005515
	Sto5g1866	473	SMART	arm_5	294	337	IPR000225	GO:0005515
	Sto5g1866	473	SMART	arm_5	137	178	IPR000225	GO:0005515

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto5g1866	195	415	U-box Gene Family	AT3G54850	28.194	6.62e-11	62.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto5g1866	-		-	gmx:100819735	600.897

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto5g1866	5	13737793	13739214	Sto5g1866	5	13737793	13739214	ECH

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