Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1860 atggCGGCAACCAATAATGTGGAGGCGGCAGGGGGTGAAGATGAGAGCGTGCAGCTAATCGGAGGAGGCGAAGGTGGCGGGGCGACGGAGGAGGTGGCTTTGAAGAAAGGGTCGTGGACGGCGGCGGAGGACGCGGTTCTGATAGAATACGTGACGAAACACGGGGAAGGGAATTGGAATGCGGTGCAGAGGAACACTGGGCTGGCCCGGTGTGGTAAGAGCTGTAGGCTGAGATGGGCTAACCATTTGAGGCCCAATTTGAAGAAAGGGGCTTTCTCTCCTGAGGAAGAGAAGCTCATCCTGGAGCTTCACGCTCAGTATGGTAACAAATGGGCTCGAATGGCTGCTCTGCTACCGGGACGAACTGACAACGAAATCAAGAATTACTGGAACACGAGGGTGAAGCGCCGGCAACGGCAAGGCCTCCCTCTCTACTCCGACGACCACGACCGGCCCACCACCTCCTCCACCCCCGTCACCCCCACCGGCCACCACCAAACTCTCTCCTCTTCTTCACCCTTCGAtttcctccaccaccaccaccatcctcATCAAACTCTCTCTTCTCCCACTCCCCCACCACCAAATTCCCTCTCCCCTCTTTCTTCCCCCCTCCCTCCCAAACCTTCCTTCAATTCCCCTTCTCCTCACATCCCCCTCTCCTCCCCCAATTCCTCCTCCACTTCCCCTTCCCCCGTTTCCTTCACCGTCTTCAACCGCCCTGCTCCCCTCCTCTGTAATCCCCTTCGATTCAAGCGATTCCGCTCTTCCTCCGGCTTCCCCCTCCATCTCCCCCCTCTTTCTCCcactaaccctaaccctaaccctattcCTGTGACCTCCTCTGTCACGACGTCACATCAAAGTCCCGATATGGGCAGGGGGTTTTCCGGATTCGGGTACCCGATTTATCATCATCAGGGTCCGAATCTGGGCAGTGGAGGGGTTCTGAGAGAGTTTTCGAATTTCGCTACCAAGTTGGAGCTGCCTTCGAATCATTTCTCGGAGCCGGAGATTAAGTTTGAGATGATGCGGAGTATGAATGAGAACGTTCAAGGGACGAAGAAACGGAGTTACTTGAGTTTGAATGAAGGGAACGATGTGTTTAATAGTGATGCGTACCGAAGTTTTGATGATTTTTCTAATGTCTCTCCTTACTGGACTTCTAATTCAGGATTGAAACTAAAGGAAGAAGCACCAGAGCTTATGAGCAAACCCATGATGAATGATGAGTTATCTTCAATGCTTTCTGTAATGCCTTCTGCTATGCCACTTCAAGATTGGCATTCTGGGAATGTAGCAGAAATGTCTAATATTGTGCAATCTTCTGGGATCAATGTTCCAGAAGATCATGATTTTGGGCTTGACATCAAGCCCATTGCTTCCTTGTTTCCTATGACCACCACAACAGACAATTCTGGGGGATGTTACTCTTGGGACAATCTATCCGCACTGGCTGAGAGAGGCTTGGAAACTTGGGACTGA 1485 0.5017 MAATNNVEAAGGEDESVQLIGGGEGGGATEEVALKKGSWTAAEDAVLIEYVTKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGAFSPEEEKLILELHAQYGNKWARMAALLPGRTDNEIKNYWNTRVKRRQRQGLPLYSDDHDRPTTSSTPVTPTGHHQTLSSSSPFDFLHHHHHPHQTLSSPTPPPPNSLSPLSSPLPPKPSFNSPSPHIPLSSPNSSSTSPSPVSFTVFNRPAPLLCNPLRFKRFRSSSGFPLHLPPLSPTNPNPNPIPVTSSVTTSHQSPDMGRGFSGFGYPIYHHQGPNLGSGGVLREFSNFATKLELPSNHFSEPEIKFEMMRSMNENVQGTKKRSYLSLNEGNDVFNSDAYRSFDDFSNVSPYWTSNSGLKLKEEAPELMSKPMMNDELSSMLSVMPSAMPLQDWHSGNVAEMSNIVQSSGINVPEDHDFGLDIKPIASLFPMTTTTDNSGGCYSWDNLSALAERGLETWD 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1860 494 MobiDBLite consensus disorder prediction 140 232 - -
Sto5g1860 494 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 23 349 - -
Sto5g1860 494 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 23 349 - -
Sto5g1860 494 MobiDBLite consensus disorder prediction 187 216 - -
Sto5g1860 494 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 138 IPR017930 -
Sto5g1860 494 MobiDBLite consensus disorder prediction 1 23 - -
Sto5g1860 494 MobiDBLite consensus disorder prediction 149 174 - -
Sto5g1860 494 Pfam Myb-like DNA-binding domain 36 83 IPR001005 -
Sto5g1860 494 Pfam Myb-like DNA-binding domain 89 132 IPR001005 -
Sto5g1860 494 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 83 IPR017930 -
Sto5g1860 494 MobiDBLite consensus disorder prediction 217 232 - -
Sto5g1860 494 ProSiteProfiles Myb-like domain profile. 31 83 IPR001005 -
Sto5g1860 494 ProSiteProfiles Myb-like domain profile. 84 134 IPR001005 -
Sto5g1860 494 CDD SANT 38 83 IPR001005 -
Sto5g1860 494 CDD SANT 91 132 IPR001005 -
Sto5g1860 494 SUPERFAMILY Homeodomain-like 34 130 IPR009057 -
Sto5g1860 494 SMART sant 88 136 IPR001005 -
Sto5g1860 494 SMART sant 35 85 IPR001005 -
Sto5g1860 494 Gene3D - 91 184 - -
Sto5g1860 494 Gene3D - 35 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1860 Sto-Chr5 13642152 13645685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1860 23 239 MYB Transcription Factor Family AT4G26930 52.727 8.16e-64 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto5g1860 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1860 - K09422 lja:Lj6g3v0869180.1 394.43