Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1859 ATGCCCTTAGCTCAAGATCCATTCTACGTTGTGAAGGAAGAGATTCAAGAATCTATTGATAAATTGCAATCTACTTTTCAACAATGGCAAAACACTCCTTCTGATGCTGCGGAGCGCGTGAATCTCTCAAAGGAGCTTCTTCCTAGTTGCGAAAGTATAGAGTGGCAGgtAGATGAATTGGACAAAGCAATTGCTGTGGCAGCTAGAGATCCTTCATGGTATGGCATTGATGAAAAAGAGCTTGAAAGTCGAAGGAGATGGACCAGCAATGCTCGTACGCAGGTGGGCACAGTGAAGAAAACAGTGGAAGCTGGAAAGGGATCAAGTATGGCAACCCGTGATAGTGCAGCAATGCACCGAGAATTAATGAGACTCCCTAATTCCCATCAAGTTGATGTACCCAATCAGTATGATGCCCAAGATAATGATGATTTCATCTCATCAGAATCGGATAGACAGCTGCTTCTAATAAGGTActtttttcctctctctctctcACAACAAGATGAGGAGTTGGATGAGCTTAGTGCAAGTGTACAAAGAATTGGAGGTGTTGGACTCACAATACATGAAGAACTCCTTGCACAGGAAAAGATAATGGATGAACTGGGTGCTGAAATGGACAGTACATCAAATCGTCTAGATTTTGTCCAGAAAAAAGTAGCTATGGTCATGAAGAAGGCTGGTGCGAAGGGCCAGATCATGATGATATTGGCTTTGGTGGTTTTGTTCGTTTTCCTCTTTATTTTAGTATTCTTCACCTAA 765 0.4105 MPLAQDPFYVVKEEIQESIDKLQSTFQQWQNTPSDAAERVNLSKELLPSCESIEWQVDELDKAIAVAARDPSWYGIDEKELESRRRWTSNARTQVGTVKKTVEAGKGSSMATRDSAAMHRELMRLPNSHQVDVPNQYDAQDNDDFISSESDRQLLLIRYFFPLSLSQQDEELDELSASVQRIGGVGLTIHEELLAQEKIMDELGAEMDSTSNRLDFVQKKVAMVMKKAGAKGQIMMILALVVLFVFLFILVFFT 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1859 254 SMART tSNARE_6 157 224 IPR000727 -
Sto5g1859 254 Gene3D - 169 233 - -
Sto5g1859 254 Coils Coil 12 32 - -
Sto5g1859 254 PANTHER SYNTAXIN PROTEIN 1 253 - -
Sto5g1859 254 Gene3D - 4 105 - -
Sto5g1859 254 PANTHER SYNTAXIN 1 253 IPR045242 -
Sto5g1859 254 Coils Coil 200 220 - -
Sto5g1859 254 Pfam Syntaxin 6, N-terminal 6 99 IPR015260 GO:0016020|GO:0048193
Sto5g1859 254 Pfam SNARE domain 199 250 IPR000727 -
Sto5g1859 254 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 162 224 IPR000727 -
Sto5g1859 254 SUPERFAMILY SNARE fusion complex 160 224 - -
Sto5g1859 254 SUPERFAMILY t-snare proteins 5 102 IPR010989 GO:0016020|GO:0016192
Sto5g1859 254 CDD SNARE_Qc 165 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1859 Sto-Chr5 13637300 13640319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1859 56 254 SNARE and Associated Proteins AT1G28490 67.839 5.68e-91 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1859 K08500 - qsu:112025744 345.895