Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1855 ATGAAGCTCGTCGCGGCGGCTAGGGTTCGGCGGGCACAGGAGGCCGTCATTAGCGGACGACCCTTCTCGGAGAAACTGGTCGAAGTCCTGTACGACATCAACGGGCGACTTCAATCCGAAGACGTAGATGTTCCTCTGACCAACGTTCGACCCGTGAGGAAAGTCGCTCTCGTTGTCGTCACCGGCGATCGCGGTCTCTGCGGTGGATTCAACAACGCAGTTACGAAAAAGGCCGAGAAGCGAATCGAAGAATTGAAGAATTTCGGATTGGATTACACGGTAATTAGTGTTGGCAAAAAGGGTAATTCGTATTTCAGACGCCGGAGTTATATTCCAGTTGATAGGTTCATAGAGGGAGGGGGGTTTCCTACTACGAAAGAAGCACAAGCTATAGCAGATGATGTGTTTTCACTGTTTGTTAGTGAAGAAGTCGATAAGGTTGAGCTTGTGTACACTAAGTTTGTGTCATTGGTTAAGTCTGACCCAGTGATTCACACATTGCTTCCATTGTCACCCAAAGGGGAAATTCGTGATGTGAATGGGAATTGTGTTGATGCCATAAATGATGAGTTTTTTAGGTTAACAAGCAAGGAAGGAAAATTGGCGGTGGAAAGGGAAAGTGGGAGGAAAATGAGGGAAAATGTTTTATCACCCCTTATGGAATTTGAGCAGGATCCTGTTCAGATTCTTGATGCTATGATGCCTCTGTATTTGAATAGTCAAATTCTGAGGGCTTTGCAGGAATCAATAGCAAGTGAGCTTGCTGCTAGAATGGCTGCCATGTCTAATGCCACTGATAATGCAGATGAGCTGAAGAAGAATCTATCAATTGTCTATAACCGGGAACGGCAGGCAAAAATCACAGGGGAGCTATTGGAAATTGTGGCTGGAGCTGAAGCACAAAACCAATTTGATTGA 918 0.4575 MKLVAAARVRRAQEAVISGRPFSEKLVEVLYDINGRLQSEDVDVPLTNVRPVRKVALVVVTGDRGLCGGFNNAVTKKAEKRIEELKNFGLDYTVISVGKKGNSYFRRRSYIPVDRFIEGGGFPTTKEAQAIADDVFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSPKGEIRDVNGNCVDAINDEFFRLTSKEGKLAVERESGRKMRENVLSPLMEFEQDPVQILDAMMPLYLNSQILRALQESIASELAARMAAMSNATDNADELKKNLSIVYNRERQAKITGELLEIVAGAEAQNQFD 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1855 305 Pfam ATP synthase 1 300 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto5g1855 305 PANTHER ATP SYNTHASE GAMMA CHAIN 1 300 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto5g1855 305 Gene3D - 53 179 - -
Sto5g1855 305 Hamap ATP synthase gamma chain [atpG]. 1 301 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto5g1855 305 ProSitePatterns ATP synthase gamma subunit signature. 287 300 IPR023632 -
Sto5g1855 305 Gene3D ATP synthase, gamma subunit, helix hairpin domain 193 301 - -
Sto5g1855 305 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 1 300 IPR035968 GO:0015986|GO:0045261|GO:0046933
Sto5g1855 305 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 300 - -
Sto5g1855 305 Coils Coil 261 281 - -
Sto5g1855 305 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 300 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto5g1855 305 Gene3D ATP synthase, gamma subunit, helix hairpin domain 1 52 - -
Sto5g1855 305 PRINTS ATP synthase gamma subunit signature 52 71 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto5g1855 305 PRINTS ATP synthase gamma subunit signature 145 162 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto5g1855 305 PRINTS ATP synthase gamma subunit signature 248 267 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto5g1855 305 PRINTS ATP synthase gamma subunit signature 279 300 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto5g1855 305 CDD F1-ATPase_gamma 1 298 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1855 Sto-Chr5 13606152 13607069 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1855 1 300 Primary Pumps ATPases AT1G15700 78.405 1.41e-166 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1855 K02115 - qsu:112000322 486.108