Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1848 ATGGGGAGCTGTTTGACCAAACGCAGACATTCGGAGCCTGAGCATAATGGGTTCAGATCAGCTGGGCCTACCGGAGTTCACAATCAGAAGACTCGTGAGCCCTACCATGTGCCGGCAAAGCCCTCCGCCACGACGACGACGACAACGGCGGCGGCGGCTCAGGCGCCGTGGAAGCCGTATGTTCCGGCCCTGAGTCCCAAACGTGTTCACAAGTCGGATGCGAATACGATTCTCGGGAAGGCATTCGAGGATGTGAAACAGTGGTACACGATTGGGAAGGAGCTAGGGCGAGGGCAGTTCGGGGTTACCTATCTGTGCATCGAGAATTCAACTGGCCGGCAATACGCTTGCAAGTCGATTTCCAAGAGGAAGCTCGCGAGCAAAGCGGATAGGGAGGATATAAAGAGGGAGATTCAGATTATGCAGCATTTGAGTGGGCAGCCGAACATTGTTGAATTCAAAGGCGCTTATGAAGATAGGAATTCGGTTCATGTCGTCATGGAGTTGTGCGCTGGAGGTGAACTCTTTGATCGGATTATTGCCAGAGGGCATTACACTGAAAGGGCTGCTGCTTCAATTTGCAGACAGATCGTTAATGTTGTTCATATCTGTCATTTTATGGGTGTGATGCATAGGGATCTGAAGCCTGAGAATTTCTTGTTGTCCAGTAAGGATGAAAATGCTCTTCTCAAAGCTACAGATTTTGGTCTCTCAGTTTTCATCGAAGAAGGAAAGGTGTATCGGGATATAGTTGGAAGTGCTTATTATGTTGCTCCAGAAGTTCTACGGCGCAGATATGGAAAGGAAATAGATATATGGAGTGCAGGAGTTATATTGTATATCTTACTCAGTGGTGTACCTCCATTCTGGGCTGAGACGGAAAAGGGAATATTTGATTCCATATTACAAGGTGATATAGATTTTGAAAGTCAGCCATGGCCAAGCATATCAACTAGTGCCAAGGACCTTGTTAGTAAGATGCTTATACAGGACCCAAAGAAACGCATTACTTCAGCTCAAGTTCTAGAGCATCCATGGATTAGAGAAGATGGAAATGCTTCTGATAAGCCGATAGACAGTGCAGTCCTATCCAGAATGAAGCAATTCAGGGCTATGAATAAACTAAAGAAACTTGCGCTGAAGGTCATTGCGGAAAATCTCTCTCAAGAAGAGATTCAAGGCTTGAAGGCTATGTTTACAAATATGGATACTGACAAGAGTGGTACAATTACCTATGAGGAACTCAAGGCAGGATTGCAAAAACTTGGCTCAAAGCTCACGGAAGCTGAAGTGCAGCAACTCATGGAAGCTGCTGATGTAGATGGAAATGGCAGCATTGACTACATAGAATTCATCACTGCTACGATGCATAGACATAAACTTGAAAGAGATGAGCATCTCTACAAAGCCTTCCAATATTTTGATAAAGATAACAGTGGGTTTATTACAAGAGATGAACTTGAAACAGCCATGAAGGAATATGGAATGGGTGATGATGCCACAATTAGGGAAATTATATCAGAAGTTGATACAGATAATGATGGTAGAATCAACTATGAAGAGTTCTGTGCAATGATGAGGAGTGGAACCACCCAACAAGGAAAATTGTTCTAA 1614 0.4455 MGSCLTKRRHSEPEHNGFRSAGPTGVHNQKTREPYHVPAKPSATTTTTTAAAAQAPWKPYVPALSPKRVHKSDANTILGKAFEDVKQWYTIGKELGRGQFGVTYLCIENSTGRQYACKSISKRKLASKADREDIKREIQIMQHLSGQPNIVEFKGAYEDRNSVHVVMELCAGGELFDRIIARGHYTERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDENALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRYGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDSILQGDIDFESQPWPSISTSAKDLVSKMLIQDPKKRITSAQVLEHPWIREDGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSQEEIQGLKAMFTNMDTDKSGTITYEELKAGLQKLGSKLTEAEVQQLMEAADVDGNGSIDYIEFITATMHRHKLERDEHLYKAFQYFDKDNSGFITRDELETAMKEYGMGDDATIREIISEVDTDNDGRINYEEFCAMMRSGTTQQGKLF 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1848 537 ProSiteProfiles EF-hand calcium-binding domain profile. 498 532 IPR002048 GO:0005509
Sto5g1848 537 MobiDBLite consensus disorder prediction 1 52 - -
Sto5g1848 537 PANTHER SERINE/THREONINE-PROTEIN KINASE 50 531 - -
Sto5g1848 537 ProSitePatterns EF-hand calcium-binding domain. 439 451 IPR018247 -
Sto5g1848 537 Coils Coil 412 432 - -
Sto5g1848 537 Gene3D Phosphorylase Kinase; domain 1 90 174 - -
Sto5g1848 537 ProSiteProfiles EF-hand calcium-binding domain profile. 390 425 IPR002048 GO:0005509
Sto5g1848 537 Pfam EF-hand domain pair 465 527 IPR002048 GO:0005509
Sto5g1848 537 Pfam EF-hand domain pair 395 455 IPR002048 GO:0005509
Sto5g1848 537 SUPERFAMILY Protein kinase-like (PK-like) 88 354 IPR011009 -
Sto5g1848 537 SUPERFAMILY EF-hand 386 526 IPR011992 -
Sto5g1848 537 ProSiteProfiles EF-hand calcium-binding domain profile. 462 497 IPR002048 GO:0005509
Sto5g1848 537 SMART serkin_6 89 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g1848 537 ProSitePatterns EF-hand calcium-binding domain. 475 487 IPR018247 -
Sto5g1848 537 Gene3D Transferase(Phosphotransferase) domain 1 175 355 - -
Sto5g1848 537 Gene3D - 356 531 - -
Sto5g1848 537 Pfam Protein kinase domain 89 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g1848 537 ProSiteProfiles EF-hand calcium-binding domain profile. 426 461 IPR002048 GO:0005509
Sto5g1848 537 CDD STKc_CAMK 89 346 - -
Sto5g1848 537 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Sto5g1848 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Sto5g1848 537 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 50 531 - -
Sto5g1848 537 SMART efh_1 466 494 IPR002048 GO:0005509
Sto5g1848 537 SMART efh_1 430 458 IPR002048 GO:0005509
Sto5g1848 537 SMART efh_1 394 422 IPR002048 GO:0005509
Sto5g1848 537 SMART efh_1 501 529 IPR002048 GO:0005509
Sto5g1848 537 ProSitePatterns EF-hand calcium-binding domain. 510 522 IPR018247 -
Sto5g1848 537 ProSiteProfiles Protein kinase domain profile. 89 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g1848 537 CDD EFh 469 527 IPR002048 GO:0005509
Sto5g1848 537 ProSitePatterns EF-hand calcium-binding domain. 403 415 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1848 Sto-Chr5 13545452 13550070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1848 1 533 EF-hand Containing Proteins AT3G20410 75.046 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sto5g1848 Pkinase 5.2e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1848 K13412 - gmx:547888 900.197