Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1843 ATGGCTAGCAATGGTGCGAGAGAGCCCTTGCTGCAACAATTGCCAGATCCGGAAGCTTACAAAAAAACAAACGGGCAGTTAAACAGGAGAAGATTTCTTCGTTGTAGAAGTGCTCCTCTTGTCAATCCTGCTGTTCCaaataaaaatggaattggCTCGATTCCACGTTCTGAGTCCATGTTTGGGAATTTACatccaagttttcgaaaagtgGCTTTATTCCTTGTTGGATATTTAGGTGTAGGAGCTGTGATCTTTTATCTTGTCAGGCACCAGATCAAGGGGAATAAAACAGACGGGATTCTTGATGCTATATACTTCACGATTGTCACAATGACCACAGTTGGATATGGAGACCTTGTACCAAATAGTAAACTCACGAAACTACTTGCCTGTGCTTTTGTCTTCACAGGAATGGCTATGGTTGGTTTGATCCTAAGCAAAGCAGCGGACTACTTGGTTGAGAAACAGGAAGTTTTGCTAATCAAAGCTTTGCATAGAGGCCAAAATGTTGGTCCAGCTCAAATTCTAAAGGAGATTGAGACCAATAAAACACGATACAAATTTTTCGTTGTATTTTTCCTACTTTTGGTTCTCATTGTTGCGGGAACAATTTTTTTAGTTGCGGTTGAGAAATTGGATATTGTTGACGCCTTCTATTGTGTTTGTTCTACAATCACAACCCTGGGTTATGGTGATAAAAGTTTCTCAACTGAAGCAGGAAGAATCTTTGCTGTGTTTTGGATATTGACAGGTACTATTTGTTTAGCTCAGCTTTTCCTCTACATTGCTGAGATGAACACTGAAAGCAGACAAAACCAACTTGTTAAGTGGGTTCTTACACGAAAGACAACCaatgaagatttggaggcagcGGATATTGATGATAACGGAATTGTTGGGGCTGCTGAGTTCATTATTTATAAGCTGAAAGAGATGGGGAAGATTAGTCAAGAAGATATTTCACTTGTAATGCAAGAGTTTGAGGAGCTTGATGTTGATCAGTCTGGCACATTGTCAATTTCTGATATAACTCTTGCTCAATCAGCTCGTCCATCTTAG 1062 0.3804 MASNGAREPLLQQLPDPEAYKKTNGQLNRRRFLRCRSAPLVNPAVPNKNGIGSIPRSESMFGNLHPSFRKVALFLVGYLGVGAVIFYLVRHQIKGNKTDGILDAIYFTIVTMTTVGYGDLVPNSKLTKLLACAFVFTGMAMVGLILSKAADYLVEKQEVLLIKALHRGQNVGPAQILKEIETNKTRYKFFVVFFLLLVLIVAGTIFLVAVEKLDIVDAFYCVCSTITTLGYGDKSFSTEAGRIFAVFWILTGTICLAQLFLYIAEMNTESRQNQLVKWVLTRKTTNEDLEAADIDDNGIVGAAEFIIYKLKEMGKISQEDISLVMQEFEELDVDQSGTLSISDITLAQSARPS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1843 353 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 19 342 IPR003280 GO:0005267|GO:0016020|GO:0071805
Sto5g1843 353 Gene3D - 173 293 - -
Sto5g1843 353 Gene3D - 65 159 - -
Sto5g1843 353 MobiDBLite consensus disorder prediction 1 21 - -
Sto5g1843 353 SUPERFAMILY Voltage-gated potassium channels 175 266 - -
Sto5g1843 353 SUPERFAMILY Voltage-gated potassium channels 67 159 - -
Sto5g1843 353 SUPERFAMILY EF-hand 276 346 IPR011992 -
Sto5g1843 353 Pfam Ion channel 74 154 IPR013099 -
Sto5g1843 353 Pfam Ion channel 195 267 IPR013099 -
Sto5g1843 353 ProSitePatterns EF-hand calcium-binding domain. 332 344 IPR018247 -
Sto5g1843 353 PRINTS Two pore domain K+ channel signature 110 138 IPR003280 GO:0005267|GO:0016020|GO:0071805
Sto5g1843 353 PRINTS Two pore domain K+ channel signature 227 236 IPR003280 GO:0005267|GO:0016020|GO:0071805
Sto5g1843 353 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 19 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1843 Sto-Chr5 13504023 13505669 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1843 55 349 Ion Channels AT5G55630 65.763 2.30e-149 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1843 K05389 - gmx:100800137 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1843 5 13504023 13505669 Sto5g1843 5 13504023 13505669 ECH