Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1818 ATGAATTCGGGGTCTATGGTTTCGTCGTTTGCTTCAAGTTCTCCAGCAAGAGATCAAGACAGAGTGGTGGCTGGTGGTGGCAGAAGCAGGTCTCCTCCTCATCATGCTTCTTCAAGTTCAAggccatcatcatcaccatctgtTTTGATTCGAATGGCCATGAGAATATCAAGAGCAAGATGGTTCAACTTCTTGAGAAGAGTGTTCCATTACCAGAATGGATCGAGGTCTGATCTTGGGTCCAATCCTTTCAATTCTAGCTCTTGGATGATGCTGGAGTTCATTGCTTTGATGGTTCAGATTACCATCACAACCTTGACTTTGGCTATTTCAAAGAGGGAGAGACCTGTTTGGCCTATGAGGATATGGATTTCTGGTTATGATATTGGTTGTGTGCTTAATCTGCTTCTGCTTTATGGGCGCTATCGTCAGATTTATCTCTCTCAAGGAGATGCCCATGGCTTTTCTGATGTGGAAAACCAGAGAGGCAATGAAGAAACCAGGTGCTCACATCTGATGAACAAATGCCGGACTTCACTTGAGCTTTTCTTTGCCATATGGTTTGTGATGGGAAATGTTTGGGTTTTTGACTCACGTtttgggtctttccaaaaaGCTCCAAAACTATATGTGCTCTGCATCTCCCTGCTTGCTTGGAATGCCATTTCCtactcttttcctttccttctcttccttctgCTATGCTGCTGTGTGCCTCTCATCAGCACCCTCCTTGGTTACAACATGAATTCTTCTGATAAAGGAGCTTCTGATGATCAGATCTCTCAGCTTCCAAGTTGGAGATATAAGCAAGTAATTCATACCAAGTTGGAGCATGGTGTTGATTCTGAAGCCAGTGAAAGTGAAGGGCTCATCAATGAAGTTGAAGATCCTGAATGTTGCATTTGCTTAGCCAAGTACAAAGACAGAGAAGAAGTAAGGCAGTTGCCTTGTTCCCATATGTTTCATCTAAAATGTGTGGATCAATGGCTCAGAATCATATCTTGCTGCCCTCTTTGTAAACAAGGATTACAGAGGTAG 1041 0.4044 MNSGSMVSSFASSSPARDQDRVVAGGGRSRSPPHHASSSSRPSSSPSVLIRMAMRISRARWFNFLRRVFHYQNGSRSDLGSNPFNSSSWMMLEFIALMVQITITTLTLAISKRERPVWPMRIWISGYDIGCVLNLLLLYGRYRQIYLSQGDAHGFSDVENQRGNEETRCSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFQKAPKLYVLCISLLAWNAISYSFPFLLFLLLCCCVPLISTLLGYNMNSSDKGASDDQISQLPSWRYKQVIHTKLEHGVDSEASESEGLINEVEDPECCICLAKYKDREEVRQLPCSHMFHLKCVDQWLRIISCCPLCKQGLQR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1818 346 Pfam Ring finger domain 299 341 IPR001841 -
Sto5g1818 346 MobiDBLite consensus disorder prediction 1 46 - -
Sto5g1818 346 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 36 345 - -
Sto5g1818 346 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 36 345 - -
Sto5g1818 346 MobiDBLite consensus disorder prediction 1 16 - -
Sto5g1818 346 CDD RING-H2_RNF111_like 298 341 - -
Sto5g1818 346 MobiDBLite consensus disorder prediction 32 46 - -
Sto5g1818 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 345 IPR013083 -
Sto5g1818 346 ProSiteProfiles Zinc finger RING-type profile. 300 341 IPR001841 -
Sto5g1818 346 SMART ring_2 300 340 IPR001841 -
Sto5g1818 346 SUPERFAMILY RING/U-box 294 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1818 Sto-Chr5 13286367 13290076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1818 49 344 C3H Transcription Factor Family AT4G26580 71.333 2.69e-149 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1818 - - gmx:100813670 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1818 5 13286367 13290076 Sto5g1818 5 13286367 13290076 ECH