Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1802 ATGCAATCTCCTAATTCGTTCTTCATGGACGTAAAGTATCAAGGTTGCTTCAATAAGTCGAGGATATGTGTGAAGAATCTGCCAAAATATGTAGCAGAAGATCGACTACGGGAATTGTTTTCACAGAAAGGAGAAATAACGGATGTACAGCTTAGGCGCACAGAAGATGGTAAGAGTCGGCAATTCGGTTATATTGGGTTTTACACAGAGCATGAAGCTGAGGAagctataaaatatttcaatagaTCCTACCTTGACACCCATAGAATCACTTGTGAGGTGGCTCTAAAAGTTGGAGATCCAAATATTCCTCGTTCACGGAGTCGATATTCTTTAAAGAAAGATGAAAAAGTGGTCCAAGATGGAAAGAAACATGCTGAAAATGGTAGTGTTGCTAAGGAAAAAAGGGGTGGAGAGAATGTGAAGGAGAGCACAGATATTGATGACCCACAGCTTCAAGAATTTCTTCAGGTCACGCAGCCTCGGGCTAAGTCAAAAATGTGGGCAAATGATACATTAGCAGTATTGGATAATATAAGTGTGAAGCAAGAAATACCAGAGAACAGAAGCAAGGACATATCAGTTCCTGTGGATGCTGGAGTTCAAAGTGGCTCATTAGATGATGGCTCCTCAAATAAACATATATCCAATAAAACAAATGATCTTGTCCACGATGATGTCATTTCGGATATGGAATATTTCAAGAGTCGGGTAACAAAGAAGTGTGAGGACGAACTAGAAGAACACTTCAGCAAGATTGGCAGTGTATCACAGGTTCATTTAGTTGTTGATAAAGATACAAAGCGGTCCAAGGGAATAGCATATATTCTTTACACACTTCCAGAATTTGCAGCCAGGGCACTAGAAGAGCTAGACAATTCAATCTTTCAAGGAAGATTGTTGTATATTTTGCCAGCCATGCAAAGATCTTCAGATAACAAGGAGAACCATTCTTCCATGGACCAGAACTCAAAAAGTTTGAAgcaaaagagagaggaagagagaaaagCAGCTGAAGCTAGTGGGGATACTAGATCATGGAATAGTCTATTCATGCGCTCTGATACAGTTGTTGAAAATATTGCCCGGAAATATGGTGTAAGCAAAAGTGATTTACTTGACCGAGAAGCTGATGATCTTGCCGTACGCATTGCGCTGGGTGAAACTCAAGTGATTGCTGAGACAAAAAAGGCCCTTACAAATGCCGGAGTGAATGTGGAGTCATTGGAGGAATTTTCCAATGGTAAAAACGTTGGTGTGAAAAGAAGCAACCATGTACTATTAGTGAAGAACTTGCCATATGGTTCTTCAGAAAATGAACTAGCGAAGATGTTTGGGAAATTTGGTGGTTTAGACAAGATAATTCTTCCTCCAACAAAGACATTGGCGTTGGTTGTTTACCTTGAAACAGCTGAAGCTCGAGCAGTGTTTCGAGGTTTAGCCTACAAGCGTTTCAAAGATGCCCCGTTGTACTTGGAATGGGCTCCTTCCAATGTTCTTATCCAGAGTTTAACATCTAAGAATAATGAAAAGAGTGGTGCAATTGGTGAAAAAGATGTTAAGCGGCAGATGTTGGAGAAACAGTGGGAAGGAATATCAGATATGGACATTGATCATGACAGAGTAGAGGGGACTGTTTTGGATGGCCAAAGTAATTTACAACTTTGTCATGCGAAGAAGGATGGACAAGTACCAAAAACAGTTGAGAAGGATAAAAGTCCTACAAAATTAAGTGTAAAAAATGTAGCTTTTGAGGCGACAAAGAAGGAGCTGAGACAGTTATTTAGCCCATTTGGCCAGATTAAGAGCTTAAGGTTGCCAATGAAATTTGGAAGTCATAGTCATAGAGGCTTTGCTTTTGTTGAGTACGTTACACAGCAGGAGGCACAAAATGCACTTAAAGCACTATCAAGCACCCATCTGTATGGCAGGCATCTGGTGATAGAGAGGGCAAAGAAAGATGATGAGAGTTTGGATGAACTACGAGCTCGGACAGGTGCTCAATTTAGTGATGAGCAAAATGGATTTCAAAATCCCACCAAGTTATCCAAGAAAAGGAACCACTTGGCCATCTTGGATTAG 2082 0.3977 MQSPNSFFMDVKYQGCFNKSRICVKNLPKYVAEDRLRELFSQKGEITDVQLRRTEDGKSRQFGYIGFYTEHEAEEAIKYFNRSYLDTHRITCEVALKVGDPNIPRSRSRYSLKKDEKVVQDGKKHAENGSVAKEKRGGENVKESTDIDDPQLQEFLQVTQPRAKSKMWANDTLAVLDNISVKQEIPENRSKDISVPVDAGVQSGSLDDGSSNKHISNKTNDLVHDDVISDMEYFKSRVTKKCEDELEEHFSKIGSVSQVHLVVDKDTKRSKGIAYILYTLPEFAARALEELDNSIFQGRLLYILPAMQRSSDNKENHSSMDQNSKSLKQKREEERKAAEASGDTRSWNSLFMRSDTVVENIARKYGVSKSDLLDREADDLAVRIALGETQVIAETKKALTNAGVNVESLEEFSNGKNVGVKRSNHVLLVKNLPYGSSENELAKMFGKFGGLDKIILPPTKTLALVVYLETAEARAVFRGLAYKRFKDAPLYLEWAPSNVLIQSLTSKNNEKSGAIGEKDVKRQMLEKQWEGISDMDIDHDRVEGTVLDGQSNLQLCHAKKDGQVPKTVEKDKSPTKLSVKNVAFEATKKELRQLFSPFGQIKSLRLPMKFGSHSHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVIERAKKDDESLDELRARTGAQFSDEQNGFQNPTKLSKKRNHLAILD 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1802 693 SUPERFAMILY RNA-binding domain, RBD 243 495 IPR035979 GO:0003676
Sto5g1802 693 SMART rrm1_1 426 493 IPR000504 GO:0003723
Sto5g1802 693 SMART rrm1_1 236 304 IPR000504 GO:0003723
Sto5g1802 693 SMART rrm1_1 21 93 IPR000504 GO:0003723
Sto5g1802 693 SMART rrm1_1 576 649 IPR000504 GO:0003723
Sto5g1802 693 MobiDBLite consensus disorder prediction 112 145 - -
Sto5g1802 693 CDD RRM3_RBM19_RRM2_MRD1 243 304 - -
Sto5g1802 693 Gene3D - 236 346 IPR012677 -
Sto5g1802 693 Gene3D - 17 144 IPR012677 -
Sto5g1802 693 SUPERFAMILY RNA-binding domain, RBD 19 108 IPR035979 GO:0003676
Sto5g1802 693 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 20 679 - -
Sto5g1802 693 CDD RRM4_RBM19_RRM3_MRD1 425 496 - -
Sto5g1802 693 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 90 IPR000504 GO:0003723
Sto5g1802 693 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 243 301 IPR000504 GO:0003723
Sto5g1802 693 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 427 489 IPR000504 GO:0003723
Sto5g1802 693 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 578 646 IPR000504 GO:0003723
Sto5g1802 693 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 97 IPR000504 GO:0003723
Sto5g1802 693 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 308 IPR000504 GO:0003723
Sto5g1802 693 PANTHER RNA-BINDING PROTEIN 19-RELATED 20 679 - -
Sto5g1802 693 SUPERFAMILY RNA-binding domain, RBD 570 676 IPR035979 GO:0003676
Sto5g1802 693 CDD RRM6_RBM19_RRM5_MRD1 575 651 - -
Sto5g1802 693 Gene3D - 418 521 IPR012677 -
Sto5g1802 693 Gene3D - 566 677 IPR012677 -
Sto5g1802 693 MobiDBLite consensus disorder prediction 311 341 - -
Sto5g1802 693 MobiDBLite consensus disorder prediction 314 341 - -
Sto5g1802 693 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 425 497 IPR000504 GO:0003723
Sto5g1802 693 CDD RRM1_MRD1 20 95 - -
Sto5g1802 693 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 575 653 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1802 Sto-Chr5 13156381 13166854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1802 20 95 Eukaryotic Initiation Factors Gene Family AT1G49760 36.842 5.67e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1802 K14787 - cit:102613427 593.964