Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1786 ATGGATCCTGCTCGCTATGGGCTACATCAAGGCTGGGATAATAACAGCGCTCTTGATGGTTATGGTGCGGTTCATGAGCCAAATTATCGGGTTGGTGGTTCATATGATGATAGGAGGTTCATAGATGAAAGGTACTCGAGGGATAGTTTATACCAGAGAAATGCCTTCCACCGTGATGTTCTGGATAGGGAGGCATATCCACCATCAGGACCTGCTGGCCATTGGAGTGAATCCAAACGGAGAGGTTATGAAGAAGATTATCCCCTCGACAGGGAATCTAGACGTATTCAAAGGCCTTATGATTCATATCATCAGATTGATGCCTTCAGAGACCGGGAGGTCGACGCGTACCCAGAATTTGATAAGTTTCGGGATGATTATGCCAGCATTGATCACTATGATGATCGAGGATATGATAAATCTAGCAGGTTTGGAGGACATGATCGTGATGACTATGCGTATGATGATTATGGATACAGGTCTCGTGTATCCCATCATCATAGGGAGGATAGCCATGAGAGGGATATTGATCATGGTCGACATAGTCATGATTCTGATTATGGAAGAGGTAGAAGAGATGGTAATTGGAGGCGGCGTGAATCTCGTGACCGGGAACATGATAAAAGATATCCAAGTCGTGAAAGAGATTTGAGTCCGCATAGGAGGCATGAGCGCTCCAgatcccattctcattctcgtTCTCGATCTCAGTCTCGTGGATACGATGATCGGCCAAGATCAAGGTCCCCTCGAGGTCGAAGTCAAGGCCGTAGTTATCGAGAAGACAGCTATGGTGACAGCCGATATGAGAGGAGTGAAAAGCGTAGGGATCGTGATGAAAAACGGCGTGAGCACTATTCAGTGGCCCCATCTGCTACCGTTGTTGTGAAAGGCCTTTCACAGAATGCGAATGAGGAAGATTTATACCAGATTCTTGCGGAATGGGGGCCGCTTCGTCATGTTCGTGTCATAAAGGAGAGAAATTCTGGCATCTCTCGTGGATTTGCTTTTATTGATTTTCCTTCTGTGGGAGCTGCACGAGCAATGATGGATAAACTTGGAGATGATGGTCTTGTTGTGGATGGTAGAAAGCTTTTTTTTGAATATAGTAGTAAGCCGACTGGAGGTCCAAGTGGACCCTTTGGTCAAGAGGGATCAATGAGATCAGGTCATAATCATAAAAGCATTACAGTACCATCTGATTGGATGTGCACGATATGTGGCTACATCAATTTTGCAAGGCGAACATCCTGCTATCAGTGTAATGAACCACGAAGTGAGGATGCTCCTGCAGCAGATATTACGTTATCAAATCCAACAGCCTTAGGAAAGAAAGGATTAGAGGCAGGTCCAACTCATGTTTTGGTTGTTCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTTCGCTATGAATTCTCCAAGCATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGATAAGTTCACTCATGTCTCAAGGGGGTTTGCATTTGTACATTTTTATTCGGTGGAGGATGCTACCAAAGCTCTTGAGGCAACCAATGGAACAACCCTTGAGAAAAATGGACAGATCCTAAGAGTAGCATATGCAAAAAGCATCCTGGGCCCTGGATCAGGAACATCTGGACCTTCCCAGTCCAGCAGTTTAGCAGCTGCTGCTATCGAGGCTGCAACATTTGCTCAACAGtATGATTCTGTTGGATGGGCTCCTAAAGAATACAATCCTGATGACAAACACTCTACTGGTCAAGAGCAAACTGGCGCAGAAGTCAGTGCTCAGAAGGATGCAATGGCTCCACAATCAGGCTTTGTTTGGGATGAGGCATCTGGTTATTACTACGATGCAGCTTCTGGGTTTTACTATGATGGCAATACTGGTCTGTACTACGATGGTAATCATGGGATTTGGTATTCATATGATCACAAAACTCAGCAATACGTTGCTTGCACTGATCAAACTGAGAATAAAGCACCTAACAATCAGCCTGAACCTTCCAAGGCATCTGATGGTTCCAGCAGTAAAAAAGTAGTTATTTCTGCACCAGCTACTACTGTTACAACTGTGGAGAGGCCAGCTTCATTGGCAGATGCAGTCCAGGCTGCTGCAACTGCTGCAATAGCtgcagagaagaaagaaaaagaaaaattaaaggaGATAAAGCTTGCTTCAAAAAGCAGTATTCTGgctaacaaaaagaaaatgaataatgtGTTGACAATGTGGAAGCAGAGGAGCCATGATAATCAGCAATCTGTATCTGTTGATGATAGATCATCTTCTGGATATTCCACAAAGAGCAAGTTCAAAACTGAGATTACAGGTTCATGGGAGAATACTGCTGCACCAGGGATTCCCAGCTCCTCTGCTACTCAGGCTGTTGCTTTGGATTCTCAGGTCCAGCCACGGCCTGTTAGTAATAGCCTTGGGGGCACATTGATGGGGGTTATAAGGGGCTCTGGAAGAGGGATAATTAAATCAGATACTTCTTACACAGGACCTACAACTGCTGCTGCTGCTCCTACAACATCAGGCTTGTCTTCAACAAATGTAGATACACCAGCAGTTGCAACTCCCTTTAGAACAGATGTCTCTGCCCTGGGCTCATATACATCTCCTGTCGCTGGCGGAAGTGGCAGAAGAAGGTTTTCAGAAATGCCTCATTCTGCTTCAACTCCCAAGGAGCAACCTCAATCTACCTACAGGGATCGTGCTGCTGAGAGGAGAAGTTTGTATGGTTCATCATCATCACTTGGGGAAGATTTGGCTGACCTCGAAACTGGGGATCCAaATCGAGATTTGGCATCGAGGAAGGGTGATCCAATGCCCTTCCCACCTGGGGTAGGTGGAGGACGTGTGGTTGGAGATGCCAACCTTGATACTTACGAGGTGATAACGGCTGACAAAGCAATTGATGAGAACAATGTTGGCAATCGGATGCTCCGCAACATGGGATGGCAAGAAGGCTTGGGACTAGGGAAAGATGGAAGTGGAATGAAAGAGCCTGTCCAAGCACAGGCTTCAGATAGTAGAGCAGGACTTGGAAGTCAGCAGAAAAAGTTGGTGGATCCTAGCCTTGAAGTTCAGGCAGGAGATAGTTACAAGACACTTATTCACAAGAAAGCACTAGCCAGGTTTTGGGAAATGTCATAG 3153 0.4478 MDPARYGLHQGWDNNSALDGYGAVHEPNYRVGGSYDDRRFIDERYSRDSLYQRNAFHRDVLDREAYPPSGPAGHWSESKRRGYEEDYPLDRESRRIQRPYDSYHQIDAFRDREVDAYPEFDKFRDDYASIDHYDDRGYDKSSRFGGHDRDDYAYDDYGYRSRVSHHHREDSHERDIDHGRHSHDSDYGRGRRDGNWRRRESRDREHDKRYPSRERDLSPHRRHERSRSHSHSRSRSQSRGYDDRPRSRSPRGRSQGRSYREDSYGDSRYERSEKRRDRDEKRREHYSVAPSATVVVKGLSQNANEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAARAMMDKLGDDGLVVDGRKLFFEYSSKPTGGPSGPFGQEGSMRSGHNHKSITVPSDWMCTICGYINFARRTSCYQCNEPRSEDAPAADITLSNPTALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGTSGPSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKHSTGQEQTGAEVSAQKDAMAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNHGIWYSYDHKTQQYVACTDQTENKAPNNQPEPSKASDGSSSKKVVISAPATTVTTVERPASLADAVQAAATAAIAAEKKEKEKLKEIKLASKSSILANKKKMNNVLTMWKQRSHDNQQSVSVDDRSSSGYSTKSKFKTEITGSWENTAAPGIPSSSATQAVALDSQVQPRPVSNSLGGTLMGVIRGSGRGIIKSDTSYTGPTTAAAAPTTSGLSSTNVDTPAVATPFRTDVSALGSYTSPVAGGSGRRRFSEMPHSASTPKEQPQSTYRDRAAERRSLYGSSSSLGEDLADLETGDPNRDLASRKGDPMPFPPGVGGGRVVGDANLDTYEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMKEPVQAQASDSRAGLGSQQKKLVDPSLEVQAGDSYKTLIHKKALARFWEMS 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1786 1050 MobiDBLite consensus disorder prediction 571 597 - -
Sto5g1786 1050 SUPERFAMILY Ran binding protein zinc finger-like 392 428 IPR036443 -
Sto5g1786 1050 MobiDBLite consensus disorder prediction 744 765 - -
Sto5g1786 1050 MobiDBLite consensus disorder prediction 131 223 - -
Sto5g1786 1050 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 372 IPR000504 GO:0003723
Sto5g1786 1050 MobiDBLite consensus disorder prediction 235 286 - -
Sto5g1786 1050 PANTHER FI21118P1 195 1049 - -
Sto5g1786 1050 PANTHER FI21118P1 38 214 - -
Sto5g1786 1050 Gene3D - 220 375 IPR012677 -
Sto5g1786 1050 CDD OCRE_SUA_like 599 650 IPR035623 -
Sto5g1786 1050 ProSitePatterns Zinc finger RanBP2-type signature. 402 421 IPR001876 -
Sto5g1786 1050 Gene3D - 393 428 - -
Sto5g1786 1050 ProSiteProfiles Zinc finger RanBP2 type profile. 398 427 IPR001876 -
Sto5g1786 1050 ProSiteProfiles G-patch domain profile. 973 1019 IPR000467 GO:0003676
Sto5g1786 1050 SUPERFAMILY RNA-binding domain, RBD 451 541 IPR035979 GO:0003676
Sto5g1786 1050 MobiDBLite consensus disorder prediction 131 286 - -
Sto5g1786 1050 CDD RRM1_RRM2_RBM5_like 451 531 - -
Sto5g1786 1050 SUPERFAMILY RNA-binding domain, RBD 287 392 IPR035979 GO:0003676
Sto5g1786 1050 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 455 521 IPR000504 GO:0003723
Sto5g1786 1050 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 354 IPR000504 GO:0003723
Sto5g1786 1050 SMART G-patch_5 971 1017 IPR000467 GO:0003676
Sto5g1786 1050 MobiDBLite consensus disorder prediction 655 676 - -
Sto5g1786 1050 Pfam G-patch domain 974 1015 IPR000467 GO:0003676
Sto5g1786 1050 CDD RRM1_RRM2_RBM5_like 290 370 - -
Sto5g1786 1050 Pfam OCRE domain 601 649 IPR041591 -
Sto5g1786 1050 MobiDBLite consensus disorder prediction 61 108 - -
Sto5g1786 1050 Gene3D - 443 588 IPR012677 -
Sto5g1786 1050 MobiDBLite consensus disorder prediction 824 851 - -
Sto5g1786 1050 MobiDBLite consensus disorder prediction 992 1021 - -
Sto5g1786 1050 SMART zf_4 400 424 IPR001876 -
Sto5g1786 1050 PANTHER RNA-BINDING PROTEIN 38 214 - -
Sto5g1786 1050 PANTHER RNA-BINDING PROTEIN 195 1049 - -
Sto5g1786 1050 SMART rrm1_1 293 368 IPR000504 GO:0003723
Sto5g1786 1050 SMART rrm1_1 454 529 IPR000504 GO:0003723
Sto5g1786 1050 MobiDBLite consensus disorder prediction 77 108 - -
Sto5g1786 1050 MobiDBLite consensus disorder prediction 867 948 - -
Sto5g1786 1050 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 453 533 IPR000504 GO:0003723
Sto5g1786 1050 MobiDBLite consensus disorder prediction 825 851 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1786 291 517 Eukaryotic Initiation Factors Gene Family AT2G36660 25.197 2.01e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1786 K13094 - gmx:100777686 1456.04