Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1781 ATGGCGATGCTGTTGAAGAAAGTGTGGGAATCGGTGTCGAACCGTTCGTGTTCGAGTTCGGGTTCGATTTCCAGCTCGGACGATCGAGTCCGATGGGCGGATTATTCGCCTGCCCTGGGCGCATTCGAGCAGATTCCTGCCGACATATTGCTCCAAATCGTGAGGATTTTAGGTCCAAAAGAGGCTGCGAAATTGAGCCTCGTGTGCAAGGCATGGATGTCGCTGGTTTCCGATAATCGCCTCTGGATTTACTTCCTTCAGAACCACCAACAGGAAGCTTGGGATTCCATTTTCTTCGCGGAGGTCAATTTGAGTTCCGGTTACCCTCTTCCAACATCCGTTGGTCAGATACCTCAGTTATCTTTCAAGCGTATATATGGCCAGAGAGCACAAGTTCCTGGTTCTGTTATTATTGATGGTGGTTCTGGTTATTGCAAGTTTGGTTGGAGCAAATACGCATGTCCATCAGGACGCTCGGCTACCTTTTTGGAATTCGGTAACATTGAGTCTCCAATGTACACTAGACTTCGACATTTTTTTGCAACTATTTACAACAGGATGCAGGTGAAACCAAGTGCTCAACCAGTCATTGTTTCTATACCGATATGCCATTATGATGATACTGAATCTTCCAAAGCATCAAGACGGCAGCTTAAGGAGGCAATTCATGCTGCCCTGTTTGACTTGAAAGTTCCTGCTATTTGTGCTGTCAACCAGGCAACTTTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATCTCTGTTAACATTGGTTTTCAGGTCACATCTATAGTCCCAATTCTAAATGGTAAGGTAATGCGCAAGGTGGGTGTGGAAGTTGTAGGAGTGGGAGCACTAAAGCTTACAGGATTCCTTAGGGAGCTGATGCAATTGTACAACatgaattttgaatctttgTACACTGTTCGCACACTAAAAGAGAAGCTATGCTATGTTGCTCTTGATTATGAAGCTGAGCTATCAAAAGATACACAAGCATCGTTTGAAGCTGCAGGAGAAGGATGGTTTACACTATCAAAAGAGCGGTTTCAAACAGGAGAGGTCTTGTTCCGGCCTCGTCTTGCTGGGTTGCAAGCAATGGGTTTGCACCAGGCCGTCGCTCTTTGTATGGACCATTGCTATTCTGCAGAATTAGCAGGTGACCCTGATTGGTTTAAGACTGTGGTTTTATCAGGGGGAACTGCATGTTTACCGGGTCTAGCAGAAAGGTTAGAAAAGGAACTCCATGAGTCCCTTCCTTCCCATTTGTCTAACGGAATCAGAGTCCTACCTCCTCCATATGGTGCCGATACTGCATGGTTTGGAGCAAAGACTATTGGCAATTTGAGCACCTTTCCTGGTCCTTTGTGTGTAAACAAGAACTCCCgtgaggtgaggttgaggttccctATGGAGAGGGATGCTTCTTCCCCTCATGATGGGGAAGGAAGTtga 1455 0.4481 MAMLLKKVWESVSNRSCSSSGSISSSDDRVRWADYSPALGAFEQIPADILLQIVRILGPKEAAKLSLVCKAWMSLVSDNRLWIYFLQNHQQEAWDSIFFAEVNLSSGYPLPTSVGQIPQLSFKRIYGQRAQVPGSVIIDGGSGYCKFGWSKYACPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPSAQPVIVSIPICHYDDTESSKASRRQLKEAIHAALFDLKVPAICAVNQATLALYAAKRTSGISVNIGFQVTSIVPILNGKVMRKVGVEVVGVGALKLTGFLRELMQLYNMNFESLYTVRTLKEKLCYVALDYEAELSKDTQASFEAAGEGWFTLSKERFQTGEVLFRPRLAGLQAMGLHQAVALCMDHCYSAELAGDPDWFKTVVLSGGTACLPGLAERLEKELHESLPSHLSNGIRVLPPPYGADTAWFGAKTIGNLSTFPGPLCVNKNSREVRLRFPMERDASSPHDGEGS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1781 484 SMART fbox_2 45 85 IPR001810 GO:0005515
Sto5g1781 484 Gene3D - 38 108 - -
Sto5g1781 484 Gene3D Actin; Chain A, domain 4 286 359 - -
Sto5g1781 484 ProSiteProfiles F-box domain profile. 39 85 IPR001810 GO:0005515
Sto5g1781 484 CDD NBD_sugar-kinase_HSP70_actin 136 272 - -
Sto5g1781 484 SUPERFAMILY F-box domain 40 104 IPR036047 GO:0005515
Sto5g1781 484 SMART actin_3 133 463 IPR004000 -
Sto5g1781 484 PANTHER MACRONUCLEAR ACTIN 87 465 - -
Sto5g1781 484 SUPERFAMILY Actin-like ATPase domain 135 253 IPR043129 -
Sto5g1781 484 Gene3D - 131 244 - -
Sto5g1781 484 Gene3D - 245 435 - -
Sto5g1781 484 Pfam F-box-like 43 82 IPR001810 GO:0005515
Sto5g1781 484 PANTHER ACTIN 87 465 IPR004000 -
Sto5g1781 484 SUPERFAMILY Actin-like ATPase domain 249 454 IPR043129 -
Sto5g1781 484 Pfam Actin 182 459 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1781 Sto-Chr5 12936768 12945773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1781 182 452 Cytoskeleton Gene Families AT3G12110 31.786 7.83e-37 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1781 K16616 - gmx:100791973 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1781 5 12936768 12945773 Sto5g1781 5 12936768 12945773 ECH