Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1777 ATGGGGAGAAGGCCCGCCAGATGCTACCGTCAAATAAAGAATAAACCCTACCCGAAGTCCCGATTCTGCCGCGGCATCCCCGACCCGAAGATCCGAATCTACGACGTCGGGACGAAGAAGAAAGGAGTGGACGAATTCCCCTTCTGCGTCCACTTGGTCTCCTGGGAGAAAGAGAACGTCTCGAGCGAAGCACTCGAGGCCGCACGGATCGCTTGCAACAAGTACATGGCCAAATTCGCCGGGAAAGACGCTTTCCATCTGAGAGTTAGGGTTCATCCGTTCCACGTTCTGCGAATCAACAAGATGCTGTCGTGTGCGGGTGCCGATAGGCTTCAGACGGGGATGAGAGGGGCCTTCGGGAAGCCGCAGGGGACGTGCGCGAGGGTGAATATCGGTCAGGTTCTTCTCTCGGTTCGATGCAGGGAGAGTAATGGGGGTCATGCGCGAGAGGCTCTTCGGAGGGCGAAGTTCAAGTTTCCGGGTCGGCAGAAGATTATTGTTAGCCGCAAGTGGGGATTTACCAAACTTAGCCGCACCGACTATTTGAAGTTGAAGTCGGAGAATCGAATTGTGGCGGATGGGGTCAATGCTAAGGTAAGCTTCGTCTCCTTCTGA 615 0.5512 MGRRPARCYRQIKNKPYPKSRFCRGIPDPKIRIYDVGTKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVNIGQVLLSVRCRESNGGHAREALRRAKFKFPGRQKIIVSRKWGFTKLSRTDYLKLKSENRIVADGVNAKVSFVSF 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1777 204 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Sto5g1777 204 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Sto5g1777 204 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Sto5g1777 204 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 199 - -
Sto5g1777 204 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Sto5g1777 204 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Sto5g1777 204 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Sto5g1777 204 Gene3D Ribosomal protein L10e/L16 1 202 IPR036920 GO:0003735|GO:0005840|GO:0006412
Sto5g1777 204 PANTHER 60S RIBOSOMAL PROTEIN L10 1 199 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1777 Sto-Chr5 12866552 12868168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1777 1 198 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.364 5.97e-129 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1777 K02866 - gmx:100779884 388.652