Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1729 ATGGAGTGGTATTTCTTCAGTCCTCGAGACAGGAAGTACCCAAATGGATCAAGAACAAATAGGGCAACAAAATCAGGATATTGGAAGGCCACAGGAAAAGATAGGAAAGTGAACTCTCAAAGTAGAGCAGTGGGGATGAAGAAAACCCTAGTTTATTACAGGGGAAGAGCACCTCATGGTTCTCGCACTGATTGGGTCATGCATGAGTATCGTCTCCATGAGAGAGAATGTGAGAATGCTTCTTCTGCCATGCAGGCGTATGCTCTATGCCGGGTGTTCAAGAAGTGCACAGTGATAACTCCaaaagtagaagaagaagtataTGCAATGAGGAACAATGGAGGAAGTTATCATCAGAATCAGAATGAGATTCAGATGGGTAGTGATCAGACATCATCAAGCATTGAACTCTATTCATCTGAATTAGGAAGAGGAGGAGGCCAAGATTTTGACTTTGATCAGAGctCTCTAGAGTGTGCAAGGATGCAACATAGGTTTACTATGCCTCCATTGGAGGTTGAAGATTTTCCTCAAGTTGGGATTTCTGAACTGAAGATGCTGCATGCACATCATCCTAATTCTTCTTCTGCTgccattaatattaataattatggaAATGAAGGTCCAACAGATATTGTGCAGGAAATTCTATCAATTGCTCATGCTTCTCAGGAACTCACTAATAATAATCACACATGGAGTGGCATTAATATTAATCATGAAGATGAAGACTTCAGTTTTATGGTTGGAAGAGATTgtgataataattataataataattacaaccATAATGCGAGTGATCATGAGTTGAGTTCTATGAGaagcaataataatattaatggcaAGTCAATAGAGATTGGAGATTTGGATGAAGAGTTCAAGGCTGATGATGATGAGAGGATGGTGGAGAATTTGAGATGGGTTGGAATGTCAAGCAAATATATGGAAAAgAGCTTTGTGGAAGATCAAAAGAATATTGTTCCTATTGAAGATATTTCAAATTTCCAAACAAACATGGCAGAGAAAGAGGTGCAAGGGTTCATCAATGATGATCATGAACATATCCCAATCAATGAGAACTTCatagatgatgaagaagaagaaggtaccACCACCATGGATGATTACTCAAGCTCTCCAATAAGCTGCTTTGATCAGATAATTCATGAAGAAACCAAAGTCAGCCATGGAATGTTTGTGGCAACACACCAAGCTTCTGAGacattcttccaccaaatagtTCCTTCACAAACCCTAAAAGTCCATCTCAATCCAATAAATCTCTCCACAGAAAATACTGAAGAGAAAGTAATAAtgagaatggagaagaagaagaagaagaagaagaagaagaaccctAGATCCTCCTTCTTCACAATAGCTAGTGCCATAGTAGTGTTCAATATCTTTGCACAAATCTTGATGCACTATTATTGTGCTAATTATTACttggaggaccaaattgaaaagatTTGGAAATGTTCAGACCAAGAGGAAGAAGATCATGAAGATGGTGGGAGGAAAGAGAAATTTgagaaagatgatgatgaaagggTTTGGTTTGTGGGTATTATTAAGAGTGGAAGAAGAGGATTATTCAGTGTGGTGTTGAAGAAGGTAGGGATTTTCCTTACAATTTCTTGGGCTCTTTGTACCATGTGGGCTAATCACATcacagttaattaa 1686 0.3375 MEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQSRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRLHERECENASSAMQAYALCRVFKKCTVITPKVEEEVYAMRNNGGSYHQNQNEIQMGSDQTSSSIELYSSELGRGGGQDFDFDQSSLECARMQHRFTMPPLEVEDFPQVGISELKMLHAHHPNSSSAAININNYGNEGPTDIVQEILSIAHASQELTNNNHTWSGININHEDEDFSFMVGRDCDNNYNNNYNHNASDHELSSMRSNNNINGKSIEIGDLDEEFKADDDERMVENLRWVGMSSKYMEKSFVEDQKNIVPIEDISNFQTNMAEKEVQGFINDDHEHIPINENFIDDEEEEGTTTMDDYSSSPISCFDQIIHEETKVSHGMFVATHQASETFFHQIVPSQTLKVHLNPINLSTENTEEKVIMRMEKKKKKKKKKNPRSSFFTIASAIVVFNIFAQILMHYYCANYYLEDQIEKIWKCSDQEEEDHEDGGRKEKFEKDDDERVWFVGIIKSGRRGLFSVVLKKVGIFLTISWALCTMWANHITVN 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1729 561 ProSiteProfiles NAC domain profile. 1 95 IPR003441 GO:0003677|GO:0006355
Sto5g1729 561 Gene3D NAC domain 1 98 IPR036093 GO:0003677|GO:0006355
Sto5g1729 561 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 156 247 - -
Sto5g1729 561 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 140 - -
Sto5g1729 561 SUPERFAMILY NAC domain 2 95 IPR036093 GO:0003677|GO:0006355
Sto5g1729 561 Pfam No apical meristem (NAM) protein 2 72 IPR003441 GO:0003677|GO:0006355
Sto5g1729 561 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 156 247 - -
Sto5g1729 561 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1729 Sto-Chr5 12453773 12458790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1729 1 454 NAC Transcription Factor Family AT1G65910 37.308 3.07e-92 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto5g1729 NAM 3.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1729 - - gmx:100809019 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1729 5 12453773 12458790 Sto5g1729 5 12453773 12458790 ECH