Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1700 ATGAGACCAAACTTTGATCTTGAAGTGGAAGCTTCTGCAGAAAATGAATCTGAAATCAGCAGCCAGGTTGCATCCAACGTATCTATACAAGAAATATCTGCAGATCCTATCTCACTTGACTTGTCTCTCAGTTTCAACAACAACGAGCTCGCGGCCAGAGAATCCGTAGGAGGACTCTCATTCTCCAGCACCAGTGAGAGCAGCAATGAGCCTGCCTCTCAAACCACAGCAGGCACCATCCCTAGAGTCTTCTCCTGCAACTACTGTCAGCGAAAGTTCTTCAGCTCGCAGGCTCTCGGCGGCCACCAGAATGCACACAAGAGGGAAAGGACACTGGCAAAGAGGGCTATGAGAATGGGGTTTTTCTCTGAGAGGTATGCAAGTCTAGCATCTCTCCCACTTCATGGCTCTTTCAGGTCCTTGGGGATAAAAGCACACTCTTCACTTCACCATGGCTTTTCTTCACCACCTATAATGAGGCCTTGTGAGGTGATGAAGAGCAATGCAAGATTTGAGCAAGGGTATGTTGGAATGCCTCCTATGTTCTTGGAAGATGATGAAGCAGAACTGCTTTGGCCTGGTAGTTTTCGTCAGGTTGGAGAGGTAGGTGATGAtaGAAGTTCAGATTTGAGTTTTACAGAGATGAATCCACAAGTAGACCTAGAGGTAGAGGACTCAACACCAGATTTGACATTGAAGCTTTGA 705 0.4681 MRPNFDLEVEASAENESEISSQVASNVSIQEISADPISLDLSLSFNNNELAARESVGGLSFSSTSESSNEPASQTTAGTIPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGFFSERYASLASLPLHGSFRSLGIKAHSSLHHGFSSPPIMRPCEVMKSNARFEQGYVGMPPMFLEDDEAELLWPGSFRQVGEVGDDRSSDLSFTEMNPQVDLEVEDSTPDLTLKL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1700 234 PANTHER ZINC FINGER PROTEIN JAGGED 1 234 IPR045320 GO:0003700
Sto5g1700 234 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 234 - -
Sto5g1700 234 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Sto5g1700 234 MobiDBLite consensus disorder prediction 1 22 - -
Sto5g1700 234 SUPERFAMILY beta-beta-alpha zinc fingers 82 111 IPR036236 -
Sto5g1700 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Sto5g1700 234 Gene3D Classic Zinc Finger 62 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1700 Sto-Chr5 12194995 12195792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1700 1 234 C2H2 Transcription Factor Family AT1G66140 49.057 2.60e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto5g1700 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1700 - - gmx:100794851 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1700 5 12194995 12195792 Sto5g1700 5 12194995 12195792 CCT