Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1699 ATGGTTTTGACCGGAACCCTTAGGAGAGTCTTCCGCCGTGGCGACAAGGCGAAAGGCCTTCCCGGCGGCGGCGATTTGGACCTGGAACCTGTGATTCCGGCGCATTTCCGGTGTCCGGTGAGCCTGGAGCTCATGAAGGATCCGGTGACTCTCGCCACCGGGATCACCTACGACAGGGAGAGCATCGAGCGGTGGGTCGAATCCGGGAACACCACGTGTCCGGTGACGAATCTGGTTCTTCCCAACACTCTCATGGTCCCGAATCACGCTATCCGGAGGCTGATCCAGGATTGGTGCGTCGAGCATCGGTCTTACGGGATCGAGAGGATTCCGACTCCGAGGATCCCCGTCGCGCCGTGCGACGTCTCCGAGGTGTGCTCGAGGGTAGTGGCGGCGGCGCGGAATGGGGACGAGAGGAAGTGTAGGGAGTTGGTGGggaagattagggtttgggggagAGAGAGCGAGAGGAACAAGAGGTGTGTTGTGGAGAATGGGGCTTGTTCTGTTTTGGCCTCTGCGTTTGATTCTTTCTCGTCATCGGTGGAGGAAAACGCGGGGGTTCTAGAGGAGATCTTGGGGGTTCTTCCATGGATGATGGTTTCTTTGCAAGAAGGAGATGTAATAGTGAAATTGGGGTCTGAAGCATCTTTGAAATCCTTGGTTTGGTTCCTAAATAGGGACGATCTCTCTGCAAGGCAGAATGCAGCCATGGTGCTCAAGGAAATGCCTGTGAGAGCTCTGGCTAAAATTGATGGTGTGGTTGAAGCTTTGGTGAAGATGATAAGAGATCCTGTAGGACCTAGTGCTACCAAAGCAAGCTTGACGAAGATTTTCCACTTGGTTTCCTCATCAGAGGACAAAGAGAGAATCACACTGAGATTTGTGGAACTGGGTTTGTTTTCTTTGTTGCTGGAGGTCATTGTGAATGCAGAGAGAAGCACATGCGAGAAGGCTTTGGGTGTTTTGGATTGTGTTTGTGATTGTAAAGAAGGAAAGGAAATGGCCATGGCGAATGCTCTTACCTTGCCTCTTGCAATCAAGAAGATTCTGAGGGTATCAGAGTTGGCAACTGAATTTTCAGTCTCCATTCTGTGGAAGCTGTGTGGTAGGGAAGATGAAGAGGTTCTGGTTGAAGCTCTTCAATTGGGAGCATTTCAGAAGCTATTGGTTTTGTTGCAGGTGGGTTGTGGAGAGAAGACGAAGGAAAAGGGGACTGAGTTGTTGAAACTGTTGAATTCTTACAAGAATAGAGCAGAGTGTGTAGATTCATCGTTGGATTTCAAGTACCTCAAGAAGCCCTTCTAA 1308 0.4977 MVLTGTLRRVFRRGDKAKGLPGGGDLDLEPVIPAHFRCPVSLELMKDPVTLATGITYDRESIERWVESGNTTCPVTNLVLPNTLMVPNHAIRRLIQDWCVEHRSYGIERIPTPRIPVAPCDVSEVCSRVVAAARNGDERKCRELVGKIRVWGRESERNKRCVVENGACSVLASAFDSFSSSVEENAGVLEEILGVLPWMMVSLQEGDVIVKLGSEASLKSLVWFLNRDDLSARQNAAMVLKEMPVRALAKIDGVVEALVKMIRDPVGPSATKASLTKIFHLVSSSEDKERITLRFVELGLFSLLLEVIVNAERSTCEKALGVLDCVCDCKEGKEMAMANALTLPLAIKKILRVSELATEFSVSILWKLCGREDEEVLVEALQLGAFQKLLVLLQVGCGEKTKEKGTELLKLLNSYKNRAECVDSSLDFKYLKKPF 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1699 435 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Sto5g1699 435 SUPERFAMILY ARM repeat 218 414 IPR016024 -
Sto5g1699 435 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Sto5g1699 435 PANTHER WDSAM1 PROTEIN 12 435 IPR045185 GO:0061630
Sto5g1699 435 CDD RING-Ubox_PUB 36 77 IPR045210 -
Sto5g1699 435 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Sto5g1699 435 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 12 435 - -
Sto5g1699 435 SUPERFAMILY RING/U-box 31 108 - -
Sto5g1699 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 105 IPR013083 -
Sto5g1699 435 Gene3D - 211 426 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1699 Sto-Chr5 12167997 12169304 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1699 29 435 U-box Gene Family AT5G37490 49.517 9.35e-126 369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1699 5 12167997 12169304 Sto5g1699 5 12167997 12169304 CCT