Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1668 ATGGCTACTTCCTTGGATATGTCACTTGACGATAGAATAAAGAACAGAAGTAACAGGGAGAGAGGTAGAGGGCGAGGCAGAGCCCCCCGTGGCCGTGGACCAGGTCGGAGTCTTGGTGGTGGAAGAATGCCTGGTGCAGCTTCTAGAGTTCCTCTTTCAATTAATGCTCGGCCATCATCATATGCCATTGCCAAGTCTATCCGAAGAACCAGGCGTTTTCCATGGCAGCATGATTTGTTTGAAGATAGCCTAAAAGCTGCGGGGATACAAGGAGTAGAAGTTGGCACGAAGTTGTATGTTTCCAATTTGGACCATGGAGTAACCAATGAAGATATAAGGGAACTTTTCTCTGAGATTGGAGACTTGAAGCGCTTTGCAGTTCACTATGATAGAAATGGACATCCTAGTGGTTCAGCTGAAGTTGTTTATACCAGAAGAAGTGATGCATTTGCAGCTCTTAAACGATACAATAATGTACTTCTGGATGGAAAGCCCATGAAGATTGAGATCGTTGGTGCTAATGCAGAATTGCCCGTATCAGCTCGTGTGAATGTGTCTGGGTTAAATGGGCAGAGGAAGAGAACAGTTGTCATGACATGTTTTTGCAGACCTGGAGGTGGTCAAACTGGAGGTCCTGCTATGTTTAATCGTGCTGTGGGATGGGGACGTCGTGGTGGAGGAAGGAGTGGTAGTGGGAGTACACGTGGTCGAGGCCGTGGACGAGCTAGGGGTCGAGGACGAGGTCGTGGGAAGAGGGATGCTGTTGAGAAATCTGCAGAGCAGCTTGATAAAGAATTGGAAACCTATCACGCGGAGGCCATGAACATTTCGTGA 834 0.4784 MATSLDMSLDDRIKNRSNRERGRGRGRAPRGRGPGRSLGGGRMPGAASRVPLSINARPSSYAIAKSIRRTRRFPWQHDLFEDSLKAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSEIGDLKRFAVHYDRNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANAELPVSARVNVSGLNGQRKRTVVMTCFCRPGGGQTGGPAMFNRAVGWGRRGGGRSGSGSTRGRGRGRARGRGRGRGKRDAVEKSAEQLDKELETYHAEAMNIS 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1668 277 MobiDBLite consensus disorder prediction 9 24 - -
Sto5g1668 277 MobiDBLite consensus disorder prediction 221 261 - -
Sto5g1668 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 173 IPR000504 GO:0003723
Sto5g1668 277 PANTHER THO COMPLEX SUBUNIT 4C 1 276 - -
Sto5g1668 277 Pfam C-terminal duplication domain of Friend of PRMT1 216 271 IPR025715 -
Sto5g1668 277 Gene3D - 85 260 IPR012677 -
Sto5g1668 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Sto5g1668 277 SUPERFAMILY RNA-binding domain, RBD 17 170 IPR035979 GO:0003676
Sto5g1668 277 Coils Coil 252 277 - -
Sto5g1668 277 SMART rrm1_1 97 169 IPR000504 GO:0003723
Sto5g1668 277 MobiDBLite consensus disorder prediction 1 49 - -
Sto5g1668 277 CDD RRM_THOC4 96 170 - -
Sto5g1668 277 SMART FoP_duplication_2 203 277 IPR025715 -
Sto5g1668 277 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1668 Sto-Chr5 11815625 11818777 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1668 95 170 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 1.71e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1668 K12881 - gmx:100801491 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1668 5 11815625 11818777 Sto5g1668 5 11815625 11818777 ECH