Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1645 ATGGCTCTTGAGTACCACCACCACAACAACAAGTGTGTgtttgaggaagaagaagaagaagatgatgatgggtTCAGCCACAATTCTTCTGCCATAacctatcatcatcatcatcatcttcctgaGGAAGCACAATCTCTCATCAATTTCAAGCCCATAATCACTTCTGGTGAATCTTTGCTTAGCTTTCAGCAGAAAGATCAATGTGTGTGGAATCAGATCAGAAATTCAGACCCAAGGTTGATTCAGGATTTCAATTCCTTTCAAACTGCTAGTAATTATCAAAATGGTCCAAAACAGAAGCATCATCAAGGGGAGGGTAGTTCATATGGTGGGTGGGTATACTCTGAAGAACCAAATGCTCCTTCTGGTAATAATGCCCTTCTTCATGAATCTTCAGCACCAAAAgaagcatcatcatcatcatcatctatccATAAGCGCCATTCTGTGGGAGAGAGCATGCAAGCCTCAAAGAAGCAATGCAGTACTAGTAAGACACCAAAACCTACAAAGTCAAGCCCATCCAAGGATCCTCAGAGTATTGCAGCCAAGAATAGAAGAGAGAGGATAAGCGAGCGACTCAAGATATTACAAGAACTTGTTCCAAATGGCTCCAagGTTGATTTGGTTACCATGTTGGAGAAAGCCATTAGTTATGTGAAGTTTCTTCAACTCCAAGTGAAGGTATTGGCAACTGATGAATTTTGGCCAGTGGAAGGAGGAAAAGCTCCTGATATTACTCAAGTAAGAGAAGCCATTGATGCCATTCTTTCATCCCAAAGAGACAGAAACTCTGTCTCAAAGTAG 810 0.3691 MALEYHHHNNKCVFEEEEEEDDDGFSHNSSAITYHHHHHLPEEAQSLINFKPIITSGESLLSFQQKDQCVWNQIRNSDPRLIQDFNSFQTASNYQNGPKQKHHQGEGSSYGGWVYSEEPNAPSGNNALLHESSAPKEASSSSSSIHKRHSVGESMQASKKQCSTSKTPKPTKSSPSKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVEGGKAPDITQVREAIDAILSSQRDRNSVSK 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1645 269 MobiDBLite consensus disorder prediction 119 181 - -
Sto5g1645 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Sto5g1645 269 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 28 260 - -
Sto5g1645 269 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 28 260 - -
Sto5g1645 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 233 IPR036638 GO:0046983
Sto5g1645 269 Pfam Helix-loop-helix DNA-binding domain 182 225 IPR011598 GO:0046983
Sto5g1645 269 Gene3D - 170 232 IPR036638 GO:0046983
Sto5g1645 269 SMART finulus 181 230 IPR011598 GO:0046983
Sto5g1645 269 CDD bHLH_AtIND_like 176 238 - -
Sto5g1645 269 MobiDBLite consensus disorder prediction 91 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1645 Sto-Chr5 11630906 11632362 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1645 6 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 47.232 1.19e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto5g1645 HLH 8.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1645 - - tcc:18601899 237.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1645 5 11630906 11632362 Sto5g1645 5 11630906 11632362 CCT