Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1644 ATGCGAATCTCGAAGCCGATTCGCCTCCAACTCCGCAAGCCGTCCGTCGAGCTCTCCAGCTCCTCCAATCGGACGACCCGGATTCGAAGCTCCAAGCCGCACGGGATATTCGCCGCCTCACCAAGACCTCTCAGCGCTGTCGCCGCCAGCTCTCCGAAGCTGTCGGTCCTCTCGTGTCCATGCTCCGAGTCGACTCGCCCGATTCGCATGAGTCCGCTCTTCTCGCCTTGCTTAACCTTGCCGTCAAAGACGAGAACAATTCCTAGATGCCACATACTCTTCACATCAAAAGTGATGATGGTTGCATTGCTTCTTGATGAAGCAACAGCAGTTAAAGATAAACTAGATTTTAGCTTGCTTGTTTCATATTCATCACTTGAACTGATATGTCACAGGAACAAAATCGACATTGTGGAAGCTGGTGCCTTAGAACCAATAATTACTTTCCTAAAGTCACAAAATATAAGTCTGCAGGAGTACGCAACTGCATCTTTGCTCACTCTATCTGCCTCTGCCACCAATAAGCCAATCATTTGTGCTTCTGGAGCCATTCCTCTTCTTGTAGAGATCCTTAGAGATGGAACCCCACAAGCTAAAGCTGATGCAGTAATGGCTCTTTCCAATTTATCCACACACCCTACCAATCTCACCACCATTCTTGAAACAAATCCAATCCCTCTCATAGTTAATCTCCTTAAAACCTGTaaaaaatcctcaaaaacaGCCGAAAAATGCTGTGCTTTGATAGAATCCTTGGTGGGTTTTGATGAAGGGAGGACTGCCTTGATATCAGAAGAAGGTTCCATTCTTGCAGTTGTGGAAGTTCTTGAAACCGGCACTCTCCAAAGCAGGGAGCACGCTGTCGGAGCATTGTTGACAATGTGCGAGAGCAATCGATGTAAATACAGGGAACCGATTCTCAGAGAAGGTGTTATTCCAGGACTTCTGGAGCTTACAGTTCAAGGAACTCCTAAATCTCAGTTGAAAGCACGTAGCCTTCTGAAGCTACTAAGAGAATCTCCTCATCCTAGATCTGAAATGCAACCTGACACTATTGAGAACATAGTATGCAACATCATATCCCGGATCGATGGGGATGATGATCAATCTGGTAAGGCAAAGAAAATGCTAGCTGAGATGGTCCAAGTCAGCATGGAACAGAGTCTGAGACATCTACAGCAAAGGGCTCTTGTGTGCACCCCAACAAGTGATCTGCCTATTACTAACTGTGCCTCTGAAGTTTCTTCAAAATGA 1254 0.4585 MRISKPIRLQLRKPSVELSSSSNRTTRIRSSKPHGIFAASPRPLSAVAASSPKLSVLSCPCSESTRPIRMSPLFSPCLTLPSKTRTIPRCHILFTSKVMMVALLLDEATAVKDKLDFSLLVSYSSLELICHRNKIDIVEAGALEPIITFLKSQNISLQEYATASLLTLSASATNKPIICASGAIPLLVEILRDGTPQAKADAVMALSNLSTHPTNLTTILETNPIPLIVNLLKTCKKSSKTAEKCCALIESLVGFDEGRTALISEEGSILAVVEVLETGTLQSREHAVGALLTMCESNRCKYREPILREGVIPGLLELTVQGTPKSQLKARSLLKLLRESPHPRSEMQPDTIENIVCNIISRIDGDDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPTSDLPITNCASEVSSK 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1644 417 SUPERFAMILY ARM repeat 131 365 IPR016024 -
Sto5g1644 417 SMART arm_5 171 211 IPR000225 GO:0005515
Sto5g1644 417 SMART arm_5 130 170 IPR000225 GO:0005515
Sto5g1644 417 SMART arm_5 212 254 IPR000225 GO:0005515
Sto5g1644 417 SMART arm_5 255 296 IPR000225 GO:0005515
Sto5g1644 417 Gene3D - 252 397 IPR011989 -
Sto5g1644 417 Gene3D - 83 251 IPR011989 -
Sto5g1644 417 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 120 396 - -
Sto5g1644 417 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 182 224 IPR000225 GO:0005515
Sto5g1644 417 PANTHER U BOX DOMAIN-CONTAINING 120 396 - -
Sto5g1644 417 Pfam Armadillo/beta-catenin-like repeat 132 169 IPR000225 GO:0005515
Sto5g1644 417 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 141 183 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1644 Sto-Chr5 11604772 11607742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1644 98 342 U-box Gene Family AT2G23140 34.694 2.03e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1644 - - ahf:112733684 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1644 5 11604772 11607742 Sto5g1644 5 11604772 11607742 CCT